myRT

myRT report for GCA_002863725.1_ASM286372v1

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Seq: CP019122.1 Vibrio vulnificus strain FORC_054 chromosome 2, complete sequence (1777082 bp)
Overview 1 RT 1: 27398-31085 bp 2 RT 2: 934671-941954 bp 3 RT 3: 992356-1005191 bp 4 RT 4: 1698939-1702067 bp Neighborhood of RT #1 [27398, 31085] PRK03601 RVT-GII GIIM Neighborhood of RT #2 [934671, 941959] OmpR DUF3404 BaeS RVT-GII GIIM pntB pntA Neighborhood of RT #3 [992356, 1005199] PAS_3 Tar TolB RVT-GII GIIM NodN dCache_1 PRK11107 GAF_2 PRK11107 PRK11107 PRK11107 PRK11107 Neighborhood of RT #4 [1698939, 1702067] GRXB OYE_like_FMN RVT-GII Feature: gene Location: 27398-28297 bp Ori: AUL97186.1 Feature: domain Description: PRK03601 Location: 27401-28217 bp Feature: domain Description: PRK03601 Location: 27401 -2821 7 bp Feature: gene Location: 28335-28496 bp Feature: gene Location: 29090-30373 bp Ori: AUL97188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29303-29924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29303-29924 bp Feature: domain Description: GIIM Note: maturase Location: 29975-30194 bp Feature: domain Description: GIIM Note: maturase Location: 29975-301 94 bp Feature: gene Location: 30506-30709 bp Feature: gene Location: 30774-31085 bp Feature: gene Location: 934671-935333 bp Ori: AUL97960.1 Feature: domain Description: OmpR Location: 934683-935328 bp Feature: domain Description: OmpR Location: 934683-935328 bp Feature: gene Location: 935308-936759 bp Ori: AUL97961.1 Feature: domain Description: DUF3404 Location: 935362-936130 bp Feature: domain Description: DUF3404 Location: 935362-9361 30 bp Feature: domain Description: BaeS Location: 936130-936742 bp Feature: domain Description: BaeS Location: 9361 30-936742 bp Feature: gene Location: 936932-938215 bp Ori: AUL97962.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937145-937766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9371 45-937766 bp Feature: domain Description: GIIM Note: maturase Location: 937817-938030 bp Feature: domain Description: GIIM Note: maturase Location: 93781 7-938030 bp Feature: gene Location: 938995-940389 bp Ori: AUL97963.1 Feature: domain Description: pntB Location: 938998-940387 bp Feature: domain Description: pntB Location: 938998-940387 bp Feature: gene Location: 940403-941959 bp Ori: AUL97964.1 Feature: domain Description: pntA Location: 940412-941954 bp Feature: domain Description: pntA Location: 94041 2-941 954 bp Feature: gene Location: 992356-993900 bp Ori: AUL98014.1 Feature: domain Description: PAS_3 Location: 992440-992692 bp Feature: domain Description: PAS_3 Location: 992440-992692 bp Feature: domain Description: Tar Location: 992929-993895 bp Feature: domain Description: Tar Location: 992929-993895 bp Feature: gene Location: 993966-996800 bp Ori: AUL98015.1 Feature: domain Description: TolB Location: 995157-995628 bp Feature: domain Description: TolB Location: 9951 57-995628 bp Feature: gene Location: 997829-999112 bp Ori: AUL98016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998042-998663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998042-998663 bp Feature: domain Description: GIIM Note: maturase Location: 998714-998927 bp Feature: domain Description: GIIM Note: maturase Location: 99871 4-998927 bp Feature: gene Location: 999913-1000590 bp Ori: AUL98017.1 Feature: domain Description: NodN Location: 1000144-1000585 bp Feature: domain Description: NodN Location: 1 0001 44-1 000585 bp Feature: gene Location: 1001087-1005199 bp Ori: AUL98018.1 Feature: domain Description: dCache_1 Location: 1001210-1001993 bp Feature: domain Description: dCache_1 Location: 1 001 21 0-1 001 993 bp Feature: domain Description: PRK11107 Location: 1002032-1002251 bp Feature: domain Description: PRK1 1 1 07 Location: 1 002032-1 002251 bp Feature: domain Description: GAF_2 Location: 1002314-1002707 bp Feature: domain Description: GAF_2 Location: 1 00231 4-1 002707 bp Feature: domain Description: PRK11107 Location: 1003067-1003835 bp Feature: domain Description: PRK1 1 1 07 Location: 1 003067-1 003835 bp Feature: domain Description: PRK11107 Location: 1004033-1004363 bp Feature: domain Description: PRK1 1 1 07 Location: 1 004033-1 004363 bp Feature: domain Description: PRK11107 Location: 1004405-1004681 bp Feature: domain Description: PRK1 1 1 07 Location: 1 004405-1 004681 bp Feature: domain Description: PRK11107 Location: 1004822-1005191 bp Feature: domain Description: PRK1 1 1 07 Location: 1 004822-1 0051 91 bp Feature: gene Location: 1698939-1699568 bp Ori: AUL98621.1 Feature: domain Description: GRXB Location: 1698945-1699563 bp Feature: domain Description: GRXB Location: 1 698945-1 699563 bp Feature: gene Location: 1699579-1700673 bp Ori: AUL98622.1 Feature: domain Description: OYE_like_FMN Location: 1699588-1700611 bp Feature: domain Description: OYE_like_FMN Location: 1 699588-1 70061 1 bp Feature: gene Location: 1700652-1701200 bp Ori: AUL98623.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1700865-1701156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 700865-1 701 1 56 bp Feature: gene Location: 1701346-1701579 bp Feature: gene Location: 1701699-1702067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03601 (HTH-type transcriptional regulator HdfR), RVT-GII, GIIM (pfam08388), OmpR (COG0745), DUF3404 (pfam11884), BaeS (COG0642), pntB (PRK09444), pntA (TIGR00561), PAS_3 (pfam08447), Tar (COG0840)
TolB (COG0823), NodN (cd03450), dCache_1 (pfam02743), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), GAF_2 (pfam13185), GRXB (TIGR02182), OYE_like_FMN (cd02933)

Seq: CP019121.1 Vibrio vulnificus strain FORC_054 chromosome 1, complete sequence (3311092 bp)
Overview 1 RT 1: 667878-676015 bp 2 RT 2: 684999-689811 bp 3 RT 3: 726867-733264 bp 4 RT 4: 783737-792057 bp 5 RT 5: 1347064-1353748 bp Neighborhood of RT #1 [667878, 676068] Tra5 HTH_Tnp_1 HTH_Tnp_1 RVT-UG10 InsE COG3547 Neighborhood of RT #2 [684999, 689811] RVT-GII GIIM Neighborhood of RT #3 [726867, 733269] ThiL PRK11068 RVT-GII GIIM dxs PRK10581 Neighborhood of RT #4 [783737, 792059] PRK14325 PRK08849 RVT-GII GIIM PRK09601 Neighborhood of RT #5 [1347064, 1353828] grxA Fe-ADH-like RVT-GII GIIM PRK11302 NOD_PanD_pyr Feature: gene Location: 667878-668888 bp Ori: AUL94754.1 Feature: domain Description: Tra5 Location: 668163-668742 bp Feature: domain Description: Tra5 Location: 668163-668742 bp Feature: gene Location: 668912-669412 bp Ori: AUL94755.1 Feature: domain Description: HTH_Tnp_1 Location: 668927-669077 bp Feature: domain Description: HTH_Tnp_1 Location: 66892 7-669077 bp Feature: domain Description: HTH_Tnp_1 Location: 669095-669317 bp Feature: domain Description: HTH_Tnp_1 Location: 669095-669317 bp Feature: gene Location: 669439-674313 bp Ori: AUL94756.1 Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 670852-671512 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 670852 -671512 bp Feature: gene Location: 674515-674859 bp Ori: AUL94757.1 Feature: domain Description: InsE Location: 674518-674782 bp Feature: domain Description: InsE Location: 674518-674782 bp Feature: gene Location: 675025-676068 bp Ori: AUL94758.1 Feature: domain Description: COG3547 Location: 675055-676015 bp Feature: domain Description: COG3547 Location: 675055-676015 bp Feature: gene Location: 684999-685169 bp Feature: gene Location: 685012-685182 bp Feature: gene Location: 685806-687089 bp Ori: AUL94770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686019-686640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686019-686640 bp Feature: domain Description: GIIM Note: maturase Location: 686691-686910 bp Feature: domain Description: GIIM Note: maturase Location: 686691-686910 bp Feature: gene Location: 687207-688493 bp Feature: gene Location: 688672-689811 bp Feature: gene Location: 726867-727835 bp Ori: AUL94806.1 Feature: domain Description: ThiL Location: 726876-727827 bp Feature: domain Description: ThiL Location: 72 6876-72 782 7 bp Feature: gene Location: 727841-728344 bp Ori: AUL94807.1 Feature: domain Description: PRK11068 Location: 727844-728333 bp Feature: domain Description: PRK11068 Location: 72 7844-72 8333 bp Feature: gene Location: 729127-730410 bp Ori: AUL94808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729340-729961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 9340-72 9961 bp Feature: domain Description: GIIM Note: maturase Location: 730012-730231 bp Feature: domain Description: GIIM Note: maturase Location: 730012 -7302 31 bp Feature: gene Location: 730499-732364 bp Ori: AUL94809.1 Feature: domain Description: dxs Location: 730535-732356 bp Feature: domain Description: dxs Location: 730535-732 356 bp Feature: gene Location: 732385-733269 bp Ori: AUL94810.1 Feature: domain Description: PRK10581 Location: 732397-733264 bp Feature: domain Description: PRK10581 Location: 732 397-7332 64 bp Feature: gene Location: 783737-785122 bp Ori: AUL94862.1 Feature: domain Description: PRK14325 Location: 783740-785030 bp Feature: domain Description: PRK1432 5 Location: 783740-785030 bp Feature: gene Location: 785468-786616 bp Ori: AUL94863.1 Feature: domain Description: PRK08849 Location: 785471-786614 bp Feature: domain Description: PRK08849 Location: 785471-786614 bp Feature: gene Location: 787428-788711 bp Ori: AUL94864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787641-788262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787641-7882 62 bp Feature: domain Description: GIIM Note: maturase Location: 788313-788532 bp Feature: domain Description: GIIM Note: maturase Location: 788313-788532 bp Feature: gene Location: 789023-789175 bp Feature: gene Location: 790968-792059 bp Ori: AUL94866.1 Feature: domain Description: PRK09601 Location: 790971-792057 bp Feature: domain Description: PRK09601 Location: 790971-792 057 bp Feature: gene Location: 1347064-1347327 bp Ori: AUL95365.1 Feature: domain Description: grxA Location: 1347067-1347316 bp Feature: domain Description: grxA Location: 1347067-1347316 bp Feature: gene Location: 1347602-1348849 bp Ori: AUL95366.1 Feature: domain Description: Fe-ADH-like Location: 1347626-1348736 bp Feature: domain Description: Fe-ADH-like Location: 134762 6-1348736 bp Feature: gene Location: 1349610-1350893 bp Ori: AUL95367.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349823-1350444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134982 3-1350444 bp Feature: domain Description: GIIM Note: maturase Location: 1350495-1350714 bp Feature: domain Description: GIIM Note: maturase Location: 1350495-1350714 bp Feature: gene Location: 1351002-1351856 bp Ori: AUL95368.1 Feature: domain Description: PRK11302 Location: 1351005-1351845 bp Feature: domain Description: PRK11302 Location: 1351005-1351845 bp Feature: gene Location: 1352167-1353828 bp Ori: AUL95369.1 Feature: domain Description: NOD_PanD_pyr Location: 1352185-1353748 bp Feature: domain Description: NOD_PanD_pyr Location: 1352 185-1353748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-UG10, InsE (COG2963), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), ThiL (COG0611), PRK11068 (phosphatidylglycerophosphatase A; Provisional), dxs (TIGR00204)
PRK10581 ((2E,6E)-farnesyl diphosphate synthase), PRK14325 ((dimethylallyl)adenosine tRNA methylthiotransferase; Provisional), PRK08849 (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional), PRK09601 (redox-regulated ATPase YchF), grxA (PRK11200), Fe-ADH-like (cd17814), PRK11302 (DNA-binding transcriptional regulator HexR; Provisional), NOD_PanD_pyr (TIGR03799)