myRT

myRT report for GCA_002870165.1_ASM287016v1

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Seq: CP025626.1 Escherichia coli strain SCEC020007 plasmid pNDM5_020007, complete sequence (144225 bp)
Overview 1 RT 1: 27793-31452 bp Neighborhood of RT #1 [27793, 31577] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 27793-27930 bp Feature: gene Location: 28075-28401 bp Feature: gene Location: 28987-30654 bp Ori: AUN45407.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29035-29272 bp Feature: domain Description: RVT_N Location: 29035-29272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29323-29965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29323-29965 bp Feature: domain Description: GIIM Note: maturase Location: 30016-30250 bp Feature: domain Description: GIIM Note: maturase Location: 3001 6-30250 bp Feature: domain Description: HNHc Note: nucleases Location: 30460-30619 bp Feature: domain Description: HNHc Note: nucleases Location: 30460-3061 9 bp Feature: gene Location: 30967-31158 bp Feature: gene Location: 31155-31577 bp Ori: AUN45409.1 Feature: domain Description: DUF1380 Location: 31158-31452 bp Feature: domain Description: DUF1 380 Location: 31 1 58-31 452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP025627.1 Escherichia coli strain SCEC020007 chromosome, complete genome (4800548 bp)
Overview 1 RT 1: 515776-519536 bp 2 RT 2: 822061-826352 bp 3 RT 3: 2788270-2793705 bp 4 RT 4: 4121491-4124868 bp 5 RT 5: 4136437-4144232 bp Neighborhood of RT #1 [515776, 519538] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [822061, 826352] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2788270, 2793705] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4121491, 4125297] COG2085 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [4136437, 4144339] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 515776-516515 bp Feature: domain Description: InsE Location: 515779-516118 bp Feature: domain Description: InsE Location: 515779-516118 bp Feature: gene Location: 516508-516879 bp Feature: gene Location: 517173-518696 bp Ori: AUN46020.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517446-518178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517446-518178 bp Feature: domain Description: GIIM Note: maturase Location: 518253-518451 bp Feature: domain Description: GIIM Note: maturase Location: 5182 53-518451 bp Feature: gene Location: 518786-519259 bp Feature: domain Description: PHA02517 Location: 518792-519257 bp Feature: domain Description: PHA02 517 Location: 518792 -5192 57 bp Feature: gene Location: 519302-519538 bp Feature: domain Description: DUF1016_N Location: 519359-519536 bp Feature: domain Description: DUF1016_N Location: 519359-519536 bp Feature: gene Location: 822061-823290 bp Ori: AUN46311.1 Feature: domain Description: YesM Location: 822553-823282 bp Feature: domain Description: YesM Location: 82 2 553-82 32 82 bp Feature: gene Location: 823363-823551 bp Feature: gene Location: 823873-824394 bp Ori: AUN46313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823879-824161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 3879-82 4161 bp Feature: domain Description: GIIM Note: maturase Location: 824209-824389 bp Feature: domain Description: GIIM Note: maturase Location: 82 42 09-82 4389 bp Feature: gene Location: 824570-824961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824900-824960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 4900-82 4960 bp Feature: gene Location: 825186-825473 bp Feature: gene Location: 825447-826352 bp Feature: gene Location: 2788270-2789009 bp Feature: domain Description: InsE Location: 2788273-2788612 bp Feature: domain Description: InsE Location: 2 7882 73-2 788612 bp Feature: gene Location: 2789002-2789373 bp Feature: gene Location: 2789667-2791190 bp Ori: AUN48073.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2789940-2790672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 789940-2 790672 bp Feature: domain Description: GIIM Note: maturase Location: 2790747-2790945 bp Feature: domain Description: GIIM Note: maturase Location: 2 790747-2 790945 bp Feature: gene Location: 2791280-2791753 bp Feature: domain Description: PHA02517 Location: 2791286-2791751 bp Feature: domain Description: PHA02 517 Location: 2 7912 86-2 791751 bp Feature: gene Location: 2791795-2793705 bp Feature: gene Location: 4121491-4121904 bp Ori: AUN49296.1 Feature: domain Description: COG2085 Location: 4121590-4121737 bp Feature: domain Description: COG2 085 Location: 412 1590-412 1737 bp Feature: gene Location: 4121831-4122318 bp Feature: domain Description: PHA02517 Location: 4121834-4122005 bp Feature: domain Description: PHA02 517 Location: 412 1834-412 2 005 bp Feature: gene Location: 4122399-4123922 bp Ori: AUN49297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4122672-4123404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 2 672 -412 3404 bp Feature: domain Description: GIIM Note: maturase Location: 4123479-4123677 bp Feature: domain Description: GIIM Note: maturase Location: 412 3479-412 3677 bp Feature: gene Location: 4124216-4124653 bp Feature: gene Location: 4124580-4125297 bp Feature: domain Description: InsE Location: 4124619-4124868 bp Feature: domain Description: InsE Location: 412 4619-412 4868 bp Feature: gene Location: 4136437-4137176 bp Feature: domain Description: InsE Location: 4136440-4136779 bp Feature: domain Description: InsE Location: 4136440-4136779 bp Feature: gene Location: 4137169-4137540 bp Feature: gene Location: 4137834-4139357 bp Ori: AUN49311.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4138107-4138839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4138107-4138839 bp Feature: domain Description: GIIM Note: maturase Location: 4138914-4139112 bp Feature: domain Description: GIIM Note: maturase Location: 4138914-4139112 bp Feature: gene Location: 4139447-4139920 bp Feature: domain Description: PHA02517 Location: 4139453-4139918 bp Feature: domain Description: PHA02 517 Location: 4139453-4139918 bp Feature: gene Location: 4139923-4141064 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4139932-4140184 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4139932 -4140184 bp Feature: gene Location: 4141519-4142451 bp Ori: AUN49312.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4141621-4142215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 414162 1-4142 2 15 bp Feature: gene Location: 4142453-4143421 bp Feature: gene Location: 4144067-4144339 bp Ori: AUN49314.1 Feature: domain Description: PRK09678 Location: 4144076-4144232 bp Feature: domain Description: PRK09678 Location: 4144076-41442 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), COG2085 (Predicted dinucleotide-binding enzyme ), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)