myRT

myRT report for GCA_002880635.1_ASM288063v1

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Seq: CP025755.1 Enterococcus faecium strain AALTL plasmid pEFA-790c, complete sequence (35515 bp)
Overview 1 RT 1: 27547-32533 bp Neighborhood of RT #1 [27547, 32556] PinE Tra8 RVT-AbiP2 Rve COG3464 Feature: gene Location: 27547-28110 bp Ori: AUO62980.1 Feature: domain Description: PinE Location: 27559-28105 bp Feature: domain Description: PinE Location: 27559-281 05 bp Feature: gene Location: 28753-29706 bp Ori: AUO62981.1 Feature: domain Description: Tra8 Location: 28756-29683 bp Feature: domain Description: Tra8 Location: 28756-29683 bp Feature: gene Location: 29771-30523 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 30032-30497 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 30032-30497 bp Feature: gene Location: 30563-31249 bp Ori: AUO62982.1 Feature: domain Description: Rve Location: 30572-31220 bp Feature: domain Description: Rve Location: 30572-31 220 bp Feature: gene Location: 31297-32556 bp Ori: AUO62983.1 Feature: domain Description: COG3464 Location: 31432-32533 bp Feature: domain Description: COG3464 Location: 31 432-32533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Rve (COG3316), COG3464 (Transposase )

Seq: CP025754.1 Enterococcus faecium strain AALTL chromosome, complete genome (2817746 bp)
Overview 1 RT 1: 670153-676984 bp 2 RT 2: 822950-839838 bp 3 RT 3: 1186986-1191587 bp 4 RT 4: 1251256-1270463 bp Neighborhood of RT #1 [670153, 676992] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #2 [822950, 839843] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc FtsK Neighborhood of RT #3 [1186986, 1191595] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #4 [1251256, 1270483] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK Feature: gene Location: 670153-671409 bp Ori: AUO60817.1 Feature: domain Description: PRK13354 Location: 670156-671401 bp Feature: domain Description: PRK13354 Location: 670156-671401 bp Feature: gene Location: 671854-673290 bp Ori: AUO60818.1 Feature: domain Description: CE4_DAC_u3_5s Location: 672658-673051 bp Feature: domain Description: CE4_DAC_u3_5s Location: 672 658-673051 bp Feature: gene Location: 673383-674771 bp Ori: AUO60819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673704-674319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673704-674319 bp Feature: domain Description: GIIM Note: maturase Location: 674376-674592 bp Feature: domain Description: GIIM Note: maturase Location: 674376-674592 bp Feature: gene Location: 675258-675857 bp Ori: AUO60820.1 Feature: domain Description: AcrR Location: 675276-675762 bp Feature: domain Description: AcrR Location: 6752 76-675762 bp Feature: gene Location: 676111-676992 bp Ori: AUO60821.1 Feature: domain Description: CcmA Location: 676114-676984 bp Feature: domain Description: CcmA Location: 676114-676984 bp Feature: gene Location: 822950-825133 bp Feature: gene Location: 825136-826074 bp Feature: domain Description: AAA_10 Location: 825142-826042 bp Feature: domain Description: AAA_10 Location: 82 5142 -82 6042 bp Feature: gene Location: 826187-828013 bp Ori: AUO60961.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826487-827186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 6487-82 7186 bp Feature: gene Location: 828710-830263 bp Ori: AUO60962.1 Feature: domain Description: AAA_10 Location: 830042-830228 bp Feature: domain Description: AAA_10 Location: 830042 -8302 2 8 bp Feature: gene Location: 830247-830639 bp Ori: AUO60963.1 Feature: domain Description: TcpE Location: 830265-830565 bp Feature: domain Description: TcpE Location: 8302 65-830565 bp Feature: gene Location: 830726-831223 bp Ori: AUO60964.1 Feature: domain Description: ArdA Location: 830744-831209 bp Feature: domain Description: ArdA Location: 830744-8312 09 bp Feature: gene Location: 831340-831507 bp Feature: gene Location: 831668-833578 bp Ori: AUO60966.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832001-832739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832 001-832 739 bp Feature: domain Description: HNHc Note: nucleases Location: 833294-833459 bp Feature: domain Description: HNHc Note: nucleases Location: 8332 94-833459 bp Feature: gene Location: 834362-835567 bp Ori: AUO60967.1 Feature: domain Description: HTH_XRE Location: 834407-834551 bp Feature: domain Description: HTH_XRE Location: 834407-834551 bp Feature: domain Description: Rol_Rep_N Location: 834578-834845 bp Feature: domain Description: Rol_Rep_N Location: 834578-834845 bp Feature: domain Description: Rep_trans Location: 834869-835478 bp Feature: domain Description: Rep_trans Location: 834869-835478 bp Feature: gene Location: 835590-835743 bp Feature: gene Location: 835746-836003 bp Feature: gene Location: 836124-837983 bp Ori: AUO60968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836433-837174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836433-837174 bp Feature: domain Description: HNHc Note: nucleases Location: 837729-837867 bp Feature: domain Description: HNHc Note: nucleases Location: 83772 9-837867 bp Feature: gene Location: 838102-838332 bp Feature: gene Location: 838716-839843 bp Feature: domain Description: FtsK Location: 839325-839838 bp Feature: domain Description: FtsK Location: 83932 5-839838 bp Feature: gene Location: 1186986-1187231 bp Ori: AUO61307.1 Feature: domain Description: HTH_XRE Location: 1187037-1187223 bp Feature: domain Description: HTH_XRE Location: 1187037-11872 2 3 bp Feature: gene Location: 1187607-1188086 bp Ori: AUO61308.1 Feature: domain Description: DUF3841 Location: 1187616-1187991 bp Feature: domain Description: DUF3841 Location: 1187616-1187991 bp Feature: gene Location: 1188264-1189760 bp Ori: AUO62891.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1188672-1189128 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1188672 -118912 8 bp Feature: gene Location: 1189906-1190220 bp Ori: AUO61309.1 Feature: domain Description: AlbA_2 Location: 1189945-1190116 bp Feature: domain Description: AlbA_2 Location: 1189945-1190116 bp Feature: gene Location: 1190336-1191595 bp Ori: AUO61310.1 Feature: domain Description: PRK09290 Location: 1190342-1191587 bp Feature: domain Description: PRK092 90 Location: 1190342 -1191587 bp Feature: gene Location: 1251256-1253427 bp Feature: gene Location: 1253384-1254415 bp Feature: domain Description: AAA_10 Location: 1253480-1254380 bp Feature: domain Description: AAA_10 Location: 12 53480-12 54380 bp Feature: gene Location: 1254438-1256264 bp Ori: AUO61363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254738-1255437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 54738-12 55437 bp Feature: gene Location: 1256961-1258511 bp Ori: AUO61364.1 Feature: domain Description: AAA_10 Location: 1258290-1258473 bp Feature: domain Description: AAA_10 Location: 12 582 90-12 58473 bp Feature: gene Location: 1258498-1258887 bp Ori: AUO61365.1 Feature: domain Description: TcpE Location: 1258516-1258816 bp Feature: domain Description: TcpE Location: 12 58516-12 58816 bp Feature: gene Location: 1258947-1259450 bp Ori: AUO61366.1 Feature: domain Description: ArdA Location: 1258965-1259436 bp Feature: domain Description: ArdA Location: 12 58965-12 59436 bp Feature: gene Location: 1259463-1259666 bp Feature: gene Location: 1259791-1261701 bp Ori: AUO61368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1260124-1260862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 6012 4-12 60862 bp Feature: domain Description: HNHc Note: nucleases Location: 1261417-1261582 bp Feature: domain Description: HNHc Note: nucleases Location: 12 61417-12 61582 bp Feature: gene Location: 1262447-1262584 bp Ori: AUO61369.1 Feature: domain Description: DUF3789 Location: 1262474-1262567 bp Feature: domain Description: DUF3789 Location: 12 62 474-12 62 567 bp Feature: gene Location: 1262581-1263765 bp Ori: AUO61370.1 Feature: domain Description: HTH_XRE Location: 1262611-1262755 bp Feature: domain Description: HTH_XRE Location: 12 62 611-12 62 755 bp Feature: domain Description: Rol_Rep_N Location: 1262788-1263052 bp Feature: domain Description: Rol_Rep_N Location: 12 62 788-12 63052 bp Feature: domain Description: Rep_trans Location: 1263076-1263688 bp Feature: domain Description: Rep_trans Location: 12 63076-12 63688 bp Feature: gene Location: 1265679-1266353 bp Ori: AUO61371.1 Feature: domain Description: Zeta_toxin Location: 1265778-1266261 bp Feature: domain Description: Zeta_toxin Location: 12 65778-12 662 61 bp Feature: gene Location: 1266431-1266670 bp Feature: gene Location: 1266764-1268623 bp Ori: AUO61373.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1267073-1267814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 67073-12 67814 bp Feature: domain Description: HNHc Note: nucleases Location: 1268369-1268507 bp Feature: domain Description: HNHc Note: nucleases Location: 12 68369-12 68507 bp Feature: gene Location: 1268742-1268972 bp Feature: gene Location: 1269338-1270483 bp Ori: AUO61375.1 Feature: domain Description: FtsK Location: 1269998-1270463 bp Feature: domain Description: FtsK Location: 12 69998-12 70463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133), AAA_10 (pfam12846), TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), FtsK (COG1674), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), DUF3789 (pfam12664), Zeta_toxin (pfam06414)