myRT

myRT report for GCA_002893785.1_ASM289378v1

Download annotations/find similar RTs

Seq: CP025943.1 Laceyella sacchari strain FBKL4.010 chromosome, complete genome (3374379 bp)
Overview 1 RT 1: 1341696-1349467 bp 2 RT 2: 1491881-1498142 bp 3 RT 3: 2109113-2113316 bp 4 RT 4: 3358981-3365292 bp Neighborhood of RT #1 [1341696, 1349484] RVT-Retrons ADPRase_NUDT5 YqxK Neighborhood of RT #2 [1491881, 1498142] PRK13299 PRK11886 RVT-GII XerC Neighborhood of RT #3 [2109113, 2113316] HTH_XRE MurNAc-LAA RVT-GII group_II_RT_mat MarR Neighborhood of RT #4 [3358981, 3365483] nucleoid_noc BcsQ RVT-GII KOG4768 nucleoid_noc ParM_like Feature: gene Location: 1341696-1344257 bp Feature: gene Location: 1344280-1345914 bp Feature: gene Location: 1345827-1347389 bp Ori: AUS10401.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1346496-1347114 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 346496-1 3471 1 4 bp Feature: gene Location: 1347764-1348309 bp Ori: AUS08572.1 Feature: domain Description: ADPRase_NUDT5 Location: 1347890-1348289 bp Feature: domain Description: ADPRase_NUDT5 Location: 1 347890-1 348289 bp Feature: gene Location: 1348306-1349484 bp Ori: AUS08573.1 Feature: domain Description: YqxK Location: 1348327-1349467 bp Feature: domain Description: YqxK Location: 1 348327-1 349467 bp Feature: gene Location: 1491881-1493107 bp Ori: AUS08727.1 Feature: domain Description: PRK13299 Location: 1491890-1493072 bp Feature: domain Description: PRK1 3299 Location: 1 491 890-1 493072 bp Feature: gene Location: 1493085-1494071 bp Ori: AUS08728.1 Feature: domain Description: PRK11886 Location: 1493115-1494057 bp Feature: domain Description: PRK1 1 886 Location: 1 4931 1 5-1 494057 bp Feature: gene Location: 1494124-1495305 bp Ori: AUS08729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494472-1495093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 494472-1 495093 bp Feature: gene Location: 1496150-1497166 bp Ori: AUS08730.1 Feature: domain Description: XerC Location: 1496246-1496801 bp Feature: domain Description: XerC Location: 1 496246-1 496801 bp Feature: gene Location: 1497774-1498142 bp Feature: gene Location: 2109113-2109460 bp Ori: AUS09197.1 Feature: domain Description: HTH_XRE Location: 2109203-2109356 bp Feature: domain Description: HTH_XRE Location: 21 09203-21 09356 bp Feature: gene Location: 2109465-2109956 bp Ori: AUS09198.1 Feature: domain Description: MurNAc-LAA Location: 2109519-2109951 bp Feature: domain Description: MurNAc-LAA Location: 21 0951 9-21 09951 bp Feature: gene Location: 2110127-2110903 bp Ori: AUS09199.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110388-2110571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 0388-21 1 0571 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2110592-2110733 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21 1 0592-21 1 0733 bp Feature: gene Location: 2112580-2113047 bp Ori: AUS09200.1 Feature: domain Description: MarR Location: 2112643-2113009 bp Feature: domain Description: MarR Location: 21 1 2643-21 1 3009 bp Feature: gene Location: 2113044-2113316 bp Feature: gene Location: 3358981-3359838 bp Ori: AUS10294.1 Feature: domain Description: nucleoid_noc Location: 3359053-3359689 bp Feature: domain Description: nucleoid_noc Location: 3359053-3359689 bp Feature: gene Location: 3359831-3360589 bp Ori: AUS10295.1 Feature: domain Description: BcsQ Location: 3359873-3360575 bp Feature: domain Description: BcsQ Location: 3359873-3360575 bp Feature: gene Location: 3360605-3361966 bp Ori: AUS10296.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360884-3361424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360884-3361 424 bp Feature: domain Description: KOG4768 Location: 3361583-3361802 bp Feature: domain Description: KOG4768 Location: 3361 583-3361 802 bp Feature: gene Location: 3363120-3363959 bp Ori: AUS10297.1 Gene: noc Feature: domain Description: nucleoid_noc Location: 3363189-3363948 bp Feature: domain Description: nucleoid_noc Location: 33631 89-3363948 bp Feature: gene Location: 3364284-3365483 bp Ori: AUS10298.1 Feature: domain Description: ParM_like Location: 3364305-3365292 bp Feature: domain Description: ParM_like Location: 3364305-3365292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ADPRase_NUDT5 (cd03424), YqxK (COG1379), PRK13299 (tRNA CCA-pyrophosphorylase; Provisional), PRK11886 (bifunctional biotin-- ligase/biotin operon repressor BirA), RVT-GII, XerC (COG4973), HTH_XRE (smart00530), MurNAc-LAA (cl02713), group_II_RT_mat (TIGR04416)
MarR (pfam01047), nucleoid_noc (TIGR04285), BcsQ (COG1192), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), ParM_like (cd10227)