myRT

myRT report for GCA_002893825.1_ASM289382v1

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Seq: CP025951.1 Klebsiella pneumoniae subsp. pneumoniae strain GD4 chromosome, complete genome (5366808 bp)
Overview 1 RT 1: 420032-424903 bp 2 RT 2: 440644-446906 bp 3 RT 3: 1687664-1691802 bp 4 RT 4: 1840018-1845431 bp 5 RT 5: 2158738-2164642 bp 6 RT 6: 2248942-2253497 bp 7 RT 7: 5175169-5180054 bp 8 RT 8: 5339211-5341987 bp Neighborhood of RT #1 [420032, 424917] dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [440644, 446906] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #3 [1687664, 1691802] umuC PRK10276 RVT-GII Neighborhood of RT #4 [1840018, 1845469] umuC PRK10276 RVT-GII PRK05318 Neighborhood of RT #5 [2158738, 2164692] AIPR IS5 RVT-GII int Neighborhood of RT #6 [2248942, 2253497] UvrB RVT-GII Neighborhood of RT #7 [5175169, 5180059] Phage_GPA RVT-GII DinI Neighborhood of RT #8 [5339211, 5341987] RVT-GII Feature: gene Location: 420032-421201 bp Ori: AUS19219.1 Feature: domain Description: dacD Location: 420041-421196 bp Feature: domain Description: dacD Location: 420041 -421 1 96 bp Feature: gene Location: 421470-421721 bp Feature: gene Location: 421721-423205 bp Ori: AUS19221.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422123-422813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4221 23-42281 3 bp Feature: gene Location: 423287-423760 bp Ori: AUS19222.1 Feature: domain Description: PRK10016 Location: 423290-423749 bp Feature: domain Description: PRK1 001 6 Location: 423290-423749 bp Feature: gene Location: 423859-424917 bp Ori: AUS19223.1 Feature: domain Description: YccC Location: 423865-424903 bp Feature: domain Description: YccC Location: 423865-424903 bp Feature: gene Location: 440644-441747 bp Ori: AUS19243.1 Feature: domain Description: STKc_PknB_like Location: 440776-441217 bp Feature: domain Description: STKc_PknB_like Location: 440776-441 21 7 bp Feature: gene Location: 441817-442059 bp Feature: gene Location: 442306-443406 bp Ori: AUS19244.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 442489-443017 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 442489-44301 7 bp Feature: gene Location: 443521-445797 bp Ori: AUS19245.1 Feature: domain Description: AAA_15 Location: 443554-444562 bp Feature: domain Description: AAA_1 5 Location: 443554-444562 bp Feature: gene Location: 446676-446906 bp Feature: gene Location: 1687664-1688929 bp Ori: AUS20417.1 Feature: domain Description: umuC Location: 1687667-1688927 bp Feature: domain Description: umuC Location: 1 687667-1 688927 bp Feature: gene Location: 1688931-1689350 bp Ori: AUS20418.1 Feature: domain Description: PRK10276 Location: 1688934-1689345 bp Feature: domain Description: PRK1 0276 Location: 1 688934-1 689345 bp Feature: gene Location: 1689430-1690914 bp Ori: AUS20419.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689832-1690522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 689832-1 690522 bp Feature: gene Location: 1690914-1691165 bp Feature: gene Location: 1691713-1691802 bp Feature: gene Location: 1840018-1841283 bp Ori: AUS20564.1 Feature: domain Description: umuC Location: 1840021-1841281 bp Feature: domain Description: umuC Location: 1 840021 -1 841 281 bp Feature: gene Location: 1841286-1841705 bp Ori: AUS20565.1 Feature: domain Description: PRK10276 Location: 1841289-1841700 bp Feature: domain Description: PRK1 0276 Location: 1 841 289-1 841 700 bp Feature: gene Location: 1841784-1843268 bp Ori: AUS20566.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842186-1842876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8421 86-1 842876 bp Feature: gene Location: 1843268-1843519 bp Feature: gene Location: 1844108-1845469 bp Ori: AUS20568.1 Feature: domain Description: PRK05318 Location: 1844132-1845431 bp Feature: domain Description: PRK0531 8 Location: 1 8441 32-1 845431 bp Feature: gene Location: 2158738-2160480 bp Ori: AUS20854.1 Feature: domain Description: AIPR Location: 2159437-2160103 bp Feature: domain Description: AIPR Location: 21 59437-21 601 03 bp Feature: gene Location: 2160828-2161808 bp Ori: AUS20855.1 Feature: domain Description: IS5 Location: 2161017-2161794 bp Feature: domain Description: IS5 Location: 21 61 01 7-21 61 794 bp Feature: gene Location: 2161908-2163221 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2162310-2163000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 6231 0-21 63000 bp Feature: gene Location: 2163221-2163472 bp Feature: gene Location: 2163640-2164692 bp Ori: AUS20857.1 Feature: domain Description: int Location: 2163643-2164642 bp Feature: domain Description: int Location: 21 63643-21 64642 bp Feature: gene Location: 2248942-2250963 bp Ori: AUS20939.1 Feature: domain Description: UvrB Location: 2248948-2250949 bp Feature: domain Description: UvrB Location: 2248948-2250949 bp Feature: gene Location: 2251174-2251425 bp Feature: gene Location: 2251425-2252909 bp Ori: AUS20941.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251827-2252517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251 827-225251 7 bp Feature: gene Location: 2253106-2253285 bp Feature: gene Location: 2253285-2253497 bp Feature: gene Location: 5175169-5177553 bp Ori: AUS23634.1 Feature: domain Description: Phage_GPA Location: 5175733-5176699 bp Feature: domain Description: Phage_GPA Location: 51 75733-51 76699 bp Feature: gene Location: 5177783-5178034 bp Feature: gene Location: 5178034-5179518 bp Ori: AUS23636.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5178436-5179126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 78436-51 791 26 bp Feature: gene Location: 5179626-5179814 bp Feature: gene Location: 5179826-5180059 bp Ori: AUS23638.1 Feature: domain Description: DinI Location: 5179871-5180054 bp Feature: domain Description: DinI Location: 51 79871 -51 80054 bp Feature: gene Location: 5339211-5339414 bp Feature: gene Location: 5339407-5339745 bp Feature: gene Location: 5339842-5341326 bp Ori: AUS23796.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5340244-5340934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5340244-5340934 bp Feature: gene Location: 5341326-5341577 bp Feature: gene Location: 5341730-5341987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional)
AIPR (pfam10592), IS5 (COG3039), int (PHA02601), UvrB (pfam12344), Phage_GPA (pfam05840), DinI (pfam06183)

Seq: CP025952.1 Klebsiella pneumoniae subsp. pneumoniae strain GD4 plasmid pKPGD4, complete sequence (170821 bp)
Overview 1 RT 1: 67692-71913 bp 2 RT 2: 139197-143400 bp Neighborhood of RT #1 [67692, 71913] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [139197, 143417] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 67692-68114 bp Ori: AUS24126.1 Feature: domain Description: DUF1380 Location: 67695-67989 bp Feature: domain Description: DUF1380 Location: 67695-67989 bp Feature: gene Location: 68111-68302 bp Feature: gene Location: 68616-70283 bp Ori: AUS24128.1 Gene: ltrA Feature: domain Description: RVT_N Location: 68664-68901 bp Feature: domain Description: RVT_N Location: 68664-68901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68952-69594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68952 -69594 bp Feature: domain Description: GIIM Note: maturase Location: 69645-69879 bp Feature: domain Description: GIIM Note: maturase Location: 69645-69879 bp Feature: domain Description: HNHc Note: nucleases Location: 70089-70248 bp Feature: domain Description: HNHc Note: nucleases Location: 70089-702 48 bp Feature: gene Location: 71163-71420 bp Feature: gene Location: 71683-71913 bp Feature: gene Location: 139197-139868 bp Ori: AUS24213.1 Feature: domain Description: Plasmid_stab_B Location: 139212-139419 bp Feature: domain Description: Plasmid_stab_B Location: 1392 12 -139419 bp Feature: domain Description: Plasmid_stab_B Location: 139524-139731 bp Feature: domain Description: Plasmid_stab_B Location: 13952 4-139731 bp Feature: gene Location: 139871-140842 bp Ori: AUS24214.1 Feature: domain Description: StbA Location: 139874-140819 bp Feature: domain Description: StbA Location: 139874-140819 bp Feature: gene Location: 141091-142575 bp Ori: AUS24215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141493-142183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141493-142 183 bp Feature: gene Location: 142575-142826 bp Feature: gene Location: 142986-143417 bp Ori: AUS24217.1 Feature: domain Description: PRK10276 Location: 143037-143400 bp Feature: domain Description: PRK102 76 Location: 143037-143400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)