myRT

myRT report for GCA_002896855.1_ASM289685v1

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Seq: CP021850.1 Pseudoclostridium thermosuccinogenes strain DSM 5807 chromosome, complete genome (4731216 bp)
Overview 1 RT 1: 337430-342566 bp 2 RT 2: 1470089-1475802 bp 3 RT 3: 3933618-3938181 bp 4 RT 4: 4467936-4473834 bp Neighborhood of RT #1 [337430, 342566] TnpB_IS66 RVT-UG6 Transposase_mut Neighborhood of RT #2 [1470089, 1475802] HTH_Tnp_1 RVT-GII GIIM RVT-GII GIIM PHA02517 Neighborhood of RT #3 [3933618, 3938789] COG3415 PHA02517 RVT-GII GIIM HTH_Tnp_1 Cu_amine_oxidN1 Neighborhood of RT #4 [4467936, 4473986] DraG PAF-AH_p_II RVT-GII GIIM AbiEii COG5340 Feature: gene Location: 337430-337786 bp Ori: AUS95237.1 Feature: domain Description: TnpB_IS66 Location: 337460-337751 bp Feature: domain Description: TnpB_IS66 Location: 337460-337751 bp Feature: gene Location: 337780-338127 bp Feature: gene Location: 338262-338771 bp Ori: AUS95239.1 Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 338265-338697 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 338265-338697 bp Feature: gene Location: 338867-340096 bp Ori: AUS95240.1 Feature: domain Description: Transposase_mut Location: 338930-339998 bp Feature: domain Description: Transposase_mut Location: 338930-339998 bp Feature: gene Location: 340248-342566 bp Feature: gene Location: 1470089-1470382 bp Ori: AUS96080.1 Feature: domain Description: HTH_Tnp_1 Location: 1470092-1470257 bp Feature: domain Description: HTH_Tnp_1 Location: 1 470092-1 470257 bp Feature: gene Location: 1470730-1471173 bp Feature: gene Location: 1471369-1472637 bp Ori: AUS96082.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1471612-1472236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 471 61 2-1 472236 bp Feature: domain Description: GIIM Note: maturase Location: 1472332-1472548 bp Feature: domain Description: GIIM Note: maturase Location: 1 472332-1 472548 bp Feature: gene Location: 1472827-1474149 bp Ori: AUS96083.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473082-1473775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 473082-1 473775 bp Feature: domain Description: GIIM Note: maturase Location: 1473835-1474048 bp Feature: domain Description: GIIM Note: maturase Location: 1 473835-1 474048 bp Feature: gene Location: 1474230-1475096 bp Feature: domain Description: PHA02517 Location: 1474368-1475055 bp Feature: domain Description: PHA0251 7 Location: 1 474368-1 475055 bp Feature: gene Location: 1475363-1475802 bp Feature: gene Location: 3933618-3934106 bp Ori: AUS98020.1 Feature: domain Description: COG3415 Location: 3933702-3934101 bp Feature: domain Description: COG341 5 Location: 3933702-39341 01 bp Feature: gene Location: 3934325-3935191 bp Feature: domain Description: PHA02517 Location: 3934463-3935156 bp Feature: domain Description: PHA0251 7 Location: 3934463-39351 56 bp Feature: gene Location: 3935272-3936594 bp Ori: AUS98021.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3935527-3936220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3935527-3936220 bp Feature: domain Description: GIIM Note: maturase Location: 3936280-3936493 bp Feature: domain Description: GIIM Note: maturase Location: 3936280-3936493 bp Feature: gene Location: 3937074-3937370 bp Ori: AUS98022.1 Feature: domain Description: HTH_Tnp_1 Location: 3937080-3937245 bp Feature: domain Description: HTH_Tnp_1 Location: 3937080-3937245 bp Feature: gene Location: 3937893-3938789 bp Ori: AUS98023.1 Feature: domain Description: Cu_amine_oxidN1 Location: 3938004-3938181 bp Feature: domain Description: Cu_amine_oxidN1 Location: 3938004-39381 81 bp Feature: gene Location: 4467936-4468352 bp Feature: domain Description: DraG Location: 4467945-4468341 bp Feature: domain Description: DraG Location: 4467945-4468341 bp Feature: gene Location: 4469019-4470128 bp Ori: AUS98435.1 Feature: domain Description: PAF-AH_p_II Location: 4469361-4470123 bp Feature: domain Description: PAF-AH_p_II Location: 4469361 -44701 23 bp Feature: gene Location: 4470526-4471824 bp Ori: AUS98436.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4470826-4471465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4470826-4471 465 bp Feature: domain Description: GIIM Note: maturase Location: 4471543-4471759 bp Feature: domain Description: GIIM Note: maturase Location: 4471 543-4471 759 bp Feature: gene Location: 4472494-4473390 bp Ori: AUS98437.1 Feature: domain Description: AbiEii Location: 4472602-4473286 bp Feature: domain Description: AbiEii Location: 4472602-4473286 bp Feature: gene Location: 4473390-4473986 bp Ori: AUS98900.1 Feature: domain Description: COG5340 Location: 4473393-4473834 bp Feature: domain Description: COG5340 Location: 4473393-4473834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-UG6, Transposase_mut (pfam00872), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3415 (Transposase ), Cu_amine_oxidN1 (pfam07833), DraG (COG1397)
PAF-AH_p_II (pfam03403), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )