myRT

myRT report for GCA_002902945.1_ASM290294v1

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Seq: CP026101.1 Paraburkholderia caribensis strain DSM 13236 chromosome 1, complete sequence (3688145 bp)
Overview 1 RT 1: 551279-558245 bp 2 RT 2: 1903713-1909120 bp Neighborhood of RT #1 [551279, 558250] R_switched_YjbE PilA RVT_N RVT-GII YkfC HNHc PglL_A Wzy_C Wzy_C_2 moaC Neighborhood of RT #2 [1903713, 1909120] PRK06349 PRK09265 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 551279-552004 bp Ori: AUT50826.1 Feature: domain Description: R_switched_YjbE Location: 551315-551852 bp Feature: domain Description: R_switched_YjbE Location: 551 31 5-551 852 bp Feature: gene Location: 552143-552760 bp Ori: AUT50827.1 Feature: domain Description: PilA Location: 552257-552488 bp Feature: domain Description: PilA Location: 552257-552488 bp Feature: gene Location: 554046-555752 bp Ori: AUT50828.1 Gene: ltrA Feature: domain Description: RVT_N Location: 554103-554346 bp Feature: domain Description: RVT_N Location: 5541 03-554346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554391-555039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554391 -555039 bp Feature: domain Description: YkfC Location: 555240-555387 bp Feature: domain Description: YkfC Location: 555240-555387 bp Feature: domain Description: HNHc Note: nucleases Location: 555567-555708 bp Feature: domain Description: HNHc Note: nucleases Location: 555567-555708 bp Feature: gene Location: 555877-557670 bp Ori: AUT50829.1 Feature: domain Description: PglL_A Location: 556384-556456 bp Feature: domain Description: PglL_A Location: 556384-556456 bp Feature: domain Description: Wzy_C Location: 556498-556966 bp Feature: domain Description: Wzy_C Location: 556498-556966 bp Feature: domain Description: Wzy_C_2 Location: 557032-557536 bp Feature: domain Description: Wzy_C_2 Location: 557032-557536 bp Feature: gene Location: 557774-558250 bp Ori: AUT50830.1 Gene: moaC Feature: domain Description: moaC Location: 557780-558245 bp Feature: domain Description: moaC Location: 557780-558245 bp Feature: gene Location: 1903713-1905044 bp Ori: AUT51872.1 Feature: domain Description: PRK06349 Location: 1903716-1905033 bp Feature: domain Description: PRK06349 Location: 1 90371 6-1 905033 bp Feature: gene Location: 1905103-1906350 bp Ori: AUT51873.1 Feature: domain Description: PRK09265 Location: 1905118-1906336 bp Feature: domain Description: PRK09265 Location: 1 9051 1 8-1 906336 bp Feature: gene Location: 1906792-1908492 bp Ori: AUT51874.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1906849-1907092 bp Feature: domain Description: RVT_N Location: 1 906849-1 907092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907137-1907785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9071 37-1 907785 bp Feature: domain Description: GIIM Note: maturase Location: 1907839-1908070 bp Feature: domain Description: GIIM Note: maturase Location: 1 907839-1 908070 bp Feature: domain Description: HNHc Note: nucleases Location: 1908298-1908454 bp Feature: domain Description: HNHc Note: nucleases Location: 1 908298-1 908454 bp Feature: gene Location: 1908443-1908829 bp Feature: gene Location: 1908935-1909120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YjbE (TIGR03717), PilA (COG4969), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), moaC (TIGR00581)
PRK06349 (homoserine dehydrogenase; Provisional), PRK09265 (aminotransferase AlaT; Validated), GIIM (pfam08388)

Seq: CP026104.1 Paraburkholderia caribensis strain DSM 13236 chromosome 4, complete sequence (442481 bp)
Overview 1 RT 1: 174024-178367 bp Neighborhood of RT #1 [174024, 178390] IS285 RVT-GII LysR Feature: gene Location: 174024-175289 bp Ori: AUT58124.1 Feature: domain Description: IS285 Location: 174135-175275 bp Feature: domain Description: IS2 85 Location: 174135-1752 75 bp Feature: gene Location: 175333-175524 bp Feature: gene Location: 175479-176748 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175728-175962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17572 8-175962 bp Feature: gene Location: 176819-177035 bp Feature: gene Location: 177473-178390 bp Ori: AUT57947.1 Feature: domain Description: LysR Location: 177482-178367 bp Feature: domain Description: LysR Location: 177482 -178367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, LysR (COG0583)