myRT

myRT report for GCA_002902965.1_ASM290296v1

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Seq: CP026109.1 Paraburkholderia hospita strain DSM 17164 chromosome 5, complete sequence (725510 bp)
Overview 1 RT 1: 532165-538247 bp Neighborhood of RT #1 [532165, 538303] DDE_Tnp_1 RVT-GII GIIM COG3547 GH27 Melibiase_C CBM35_galactosidase-like Feature: gene Location: 532165-532302 bp Feature: gene Location: 532358-532570 bp Feature: domain Description: DDE_Tnp_1 Location: 532382-532505 bp Feature: domain Description: DDE_Tnp_1 Location: 532382-532505 bp Feature: gene Location: 532808-534121 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533081-533735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533081 -533735 bp Feature: domain Description: GIIM Note: maturase Location: 533819-534023 bp Feature: domain Description: GIIM Note: maturase Location: 53381 9-534023 bp Feature: gene Location: 534848-535870 bp Ori: AUT76784.1 Feature: domain Description: COG3547 Location: 534869-535814 bp Feature: domain Description: COG3547 Location: 534869-53581 4 bp Feature: gene Location: 536747-538303 bp Ori: AUT76582.1 Feature: domain Description: GH27 Location: 536750-537611 bp Feature: domain Description: GH27 Location: 536750-53761 1 bp Feature: domain Description: Melibiase_C Location: 537650-537878 bp Feature: domain Description: Melibiase_C Location: 537650-537878 bp Feature: domain Description: CBM35_galactosidase-like Location: 537926-538247 bp Feature: domain Description: CBM35_galactosidase-like Location: 537926-538247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), GH27 (cd14792), Melibiase_C (pfam17801), CBM35_galactosidase-like (cd04081)

Seq: CP026105.1 Paraburkholderia hospita strain DSM 17164 chromosome 1, complete sequence (4021292 bp)
Overview 1 RT 1: 480069-484768 bp 2 RT 2: 565263-572202 bp 3 RT 3: 1028602-1036077 bp 4 RT 4: 1044812-1051918 bp 5 RT 5: 2072065-2076769 bp 6 RT 6: 2540566-2546674 bp 7 RT 7: 3099478-3102981 bp 8 RT 8: 3436293-3443985 bp 9 RT 9: 3579261-3583773 bp 10 RT 10: 3586336-3591272 bp Neighborhood of RT #1 [480069, 484803] TPMT RVT_N RVT-GII GIIM HNH COG2331 COG2928 Neighborhood of RT #2 [565263, 572207] R_switched_YjbE PilA RVT_N RVT-GII GIIM HNHc PglL_A Wzy_C Wzy_C_2 moaC Neighborhood of RT #3 [1028602, 1036106] degP_htrA_DO DUF836 RVT_N RVT-GII GIIM HNHc PRK05433 PRK10861 PRK10861 Neighborhood of RT #4 [1044812, 1051935] EarP RVT_N RVT-GII GIIM HNHc uvrC PRK10832 Neighborhood of RT #5 [2072065, 2076780] HNHc InsE RVT_N RVT-GII GIIM Xcc1710_like Neighborhood of RT #6 [2540566, 2546685] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Neighborhood of RT #7 [3099478, 3103025] upstrm_HI1419 RVT-GII GIIM PRK08181 Neighborhood of RT #8 [3436293, 3443996] Barstar RNase_Sa RVT_N RVT-GII GIIM HNHc PRK12861 PRK05731 Neighborhood of RT #9 [3579261, 3583790] RVT-GII GIIM OmpR hemA Neighborhood of RT #10 [3586336, 3591403] PRK06029 45_DOPA_Dioxygenase RVT-GII GIIM PotE Feature: gene Location: 480069-480716 bp Ori: AUT67273.1 Feature: domain Description: TPMT Location: 480138-480684 bp Feature: domain Description: TPMT Location: 480138-480684 bp Feature: gene Location: 481499-481690 bp Feature: gene Location: 481886-483586 bp Ori: AUT70066.1 Gene: ltrA Feature: domain Description: RVT_N Location: 481943-482186 bp Feature: domain Description: RVT_N Location: 481943-482 186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482231-482879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 2 31-482 879 bp Feature: domain Description: GIIM Note: maturase Location: 482930-483164 bp Feature: domain Description: GIIM Note: maturase Location: 482 930-483164 bp Feature: domain Description: HNH Note: nucleases Location: 483416-483551 bp Feature: domain Description: HNH Note: nucleases Location: 483416-483551 bp Feature: gene Location: 483720-484079 bp Ori: AUT67275.1 Feature: domain Description: COG2331 Location: 483723-483942 bp Feature: domain Description: COG2 331 Location: 48372 3-483942 bp Feature: gene Location: 484147-484803 bp Ori: AUT70067.1 Feature: domain Description: COG2928 Location: 484162-484768 bp Feature: domain Description: COG2 92 8 Location: 484162 -484768 bp Feature: gene Location: 565263-565988 bp Ori: AUT67335.1 Feature: domain Description: R_switched_YjbE Location: 565299-565836 bp Feature: domain Description: R_switched_YjbE Location: 5652 99-565836 bp Feature: gene Location: 566127-566744 bp Ori: AUT67336.1 Feature: domain Description: PilA Location: 566241-566556 bp Feature: domain Description: PilA Location: 5662 41-566556 bp Feature: gene Location: 568006-569712 bp Ori: AUT67337.1 Gene: ltrA Feature: domain Description: RVT_N Location: 568063-568306 bp Feature: domain Description: RVT_N Location: 568063-568306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568351-568999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568351-568999 bp Feature: domain Description: GIIM Note: maturase Location: 569050-569284 bp Feature: domain Description: GIIM Note: maturase Location: 569050-5692 84 bp Feature: domain Description: HNHc Note: nucleases Location: 569527-569668 bp Feature: domain Description: HNHc Note: nucleases Location: 56952 7-569668 bp Feature: gene Location: 569837-571627 bp Ori: AUT67338.1 Feature: domain Description: PglL_A Location: 570344-570416 bp Feature: domain Description: PglL_A Location: 570344-570416 bp Feature: domain Description: Wzy_C Location: 570458-570926 bp Feature: domain Description: Wzy_C Location: 570458-57092 6 bp Feature: domain Description: Wzy_C_2 Location: 570992-571496 bp Feature: domain Description: Wzy_C_2 Location: 570992 -571496 bp Feature: gene Location: 571731-572207 bp Ori: AUT67339.1 Gene: moaC Feature: domain Description: moaC Location: 571737-572202 bp Feature: domain Description: moaC Location: 571737-572 2 02 bp Feature: gene Location: 1028602-1030134 bp Ori: AUT67703.1 Feature: domain Description: degP_htrA_DO Location: 1028707-1030105 bp Feature: domain Description: degP_htrA_DO Location: 102 8707-1030105 bp Feature: gene Location: 1030140-1030409 bp Ori: AUT67704.1 Feature: domain Description: DUF836 Location: 1030164-1030377 bp Feature: domain Description: DUF836 Location: 1030164-1030377 bp Feature: gene Location: 1031538-1033238 bp Ori: AUT67705.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1031595-1031838 bp Feature: domain Description: RVT_N Location: 1031595-1031838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1031883-1032531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1031883-1032 531 bp Feature: domain Description: GIIM Note: maturase Location: 1032585-1032816 bp Feature: domain Description: GIIM Note: maturase Location: 1032 585-1032 816 bp Feature: domain Description: HNHc Note: nucleases Location: 1033032-1033200 bp Feature: domain Description: HNHc Note: nucleases Location: 1033032 -10332 00 bp Feature: gene Location: 1033400-1035193 bp Ori: AUT67706.1 Feature: domain Description: PRK05433 Location: 1033403-1035188 bp Feature: domain Description: PRK05433 Location: 1033403-1035188 bp Feature: gene Location: 1035213-1036106 bp Ori: AUT67707.1 Gene: lepB Feature: domain Description: PRK10861 Location: 1035222-1035750 bp Feature: domain Description: PRK10861 Location: 10352 2 2 -1035750 bp Feature: domain Description: PRK10861 Location: 1035945-1036077 bp Feature: domain Description: PRK10861 Location: 1035945-1036077 bp Feature: gene Location: 1044812-1045993 bp Ori: AUT67716.1 Feature: domain Description: EarP Location: 1044860-1045976 bp Feature: domain Description: EarP Location: 1044860-1045976 bp Feature: gene Location: 1046768-1046956 bp Feature: gene Location: 1047189-1048889 bp Ori: AUT67718.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1047246-1047489 bp Feature: domain Description: RVT_N Location: 10472 46-1047489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047534-1048182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047534-1048182 bp Feature: domain Description: GIIM Note: maturase Location: 1048236-1048467 bp Feature: domain Description: GIIM Note: maturase Location: 10482 36-1048467 bp Feature: domain Description: HNHc Note: nucleases Location: 1048698-1048851 bp Feature: domain Description: HNHc Note: nucleases Location: 1048698-1048851 bp Feature: gene Location: 1049042-1051234 bp Ori: AUT67719.1 Feature: domain Description: uvrC Location: 1049132-1051232 bp Feature: domain Description: uvrC Location: 1049132 -10512 32 bp Feature: gene Location: 1051345-1051935 bp Ori: AUT67720.1 Gene: pgsA Feature: domain Description: PRK10832 Location: 1051348-1051918 bp Feature: domain Description: PRK10832 Location: 1051348-1051918 bp Feature: gene Location: 2072065-2072361 bp Feature: domain Description: HNHc Note: nucleases Location: 2072158-2072323 bp Feature: domain Description: HNHc Note: nucleases Location: 2 072 158-2 072 32 3 bp Feature: gene Location: 2072543-2073681 bp Feature: domain Description: InsE Location: 2072558-2072834 bp Feature: domain Description: InsE Location: 2 072 558-2 072 834 bp Feature: gene Location: 2073736-2075142 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2073793-2074036 bp Feature: domain Description: RVT_N Location: 2 073793-2 074036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2074081-2074729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 074081-2 07472 9 bp Feature: domain Description: GIIM Note: maturase Location: 2074783-2075014 bp Feature: domain Description: GIIM Note: maturase Location: 2 074783-2 075014 bp Feature: gene Location: 2075093-2075479 bp Feature: gene Location: 2076406-2076780 bp Ori: AUT68488.1 Feature: domain Description: Xcc1710_like Location: 2076445-2076769 bp Feature: domain Description: Xcc1710_like Location: 2 076445-2 076769 bp Feature: gene Location: 2540566-2541438 bp Ori: AUT68875.1 Gene: pssA Feature: domain Description: PssA Location: 2540701-2541382 bp Feature: domain Description: PssA Location: 2 540701-2 541382 bp Feature: gene Location: 2541459-2542097 bp Ori: AUT68876.1 Feature: domain Description: PRK05305 Location: 2541483-2542092 bp Feature: domain Description: PRK05305 Location: 2 541483-2 542 092 bp Feature: gene Location: 2542215-2543915 bp Ori: AUT68877.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2542272-2542515 bp Feature: domain Description: RVT_N Location: 2 542 2 72 -2 542 515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2542560-2543208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 542 560-2 5432 08 bp Feature: domain Description: GIIM Note: maturase Location: 2543262-2543493 bp Feature: domain Description: GIIM Note: maturase Location: 2 5432 62 -2 543493 bp Feature: domain Description: HNHc Note: nucleases Location: 2543736-2543877 bp Feature: domain Description: HNHc Note: nucleases Location: 2 543736-2 543877 bp Feature: gene Location: 2545074-2546090 bp Ori: AUT68878.1 Feature: domain Description: PRK05479 Location: 2545077-2546058 bp Feature: domain Description: PRK05479 Location: 2 545077-2 546058 bp Feature: gene Location: 2546194-2546685 bp Ori: AUT70253.1 Feature: domain Description: ilvH Location: 2546197-2546674 bp Feature: domain Description: ilvH Location: 2 546197-2 546674 bp Feature: gene Location: 3099478-3099717 bp Feature: gene Location: 3099742-3099990 bp Feature: domain Description: upstrm_HI1419 Location: 3099754-3099946 bp Feature: domain Description: upstrm_HI1419 Location: 3099754-3099946 bp Feature: gene Location: 3100230-3101597 bp Ori: AUT69297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100557-3101178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100557-3101178 bp Feature: domain Description: GIIM Note: maturase Location: 3101229-3101433 bp Feature: domain Description: GIIM Note: maturase Location: 31012 2 9-3101433 bp Feature: gene Location: 3101817-3102062 bp Feature: gene Location: 3102210-3103025 bp Ori: AUT69298.1 Feature: domain Description: PRK08181 Location: 3102225-3102981 bp Feature: domain Description: PRK08181 Location: 3102 2 2 5-3102 981 bp Feature: gene Location: 3436293-3436853 bp Ori: AUT69545.1 Feature: domain Description: Barstar Location: 3436578-3436818 bp Feature: domain Description: Barstar Location: 3436578-3436818 bp Feature: gene Location: 3436870-3437271 bp Ori: AUT69546.1 Feature: domain Description: RNase_Sa Location: 3436990-3437263 bp Feature: domain Description: RNase_Sa Location: 3436990-34372 63 bp Feature: gene Location: 3437412-3439112 bp Ori: AUT70326.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3437469-3437712 bp Feature: domain Description: RVT_N Location: 3437469-3437712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437757-3438405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437757-3438405 bp Feature: domain Description: GIIM Note: maturase Location: 3438456-3438690 bp Feature: domain Description: GIIM Note: maturase Location: 3438456-3438690 bp Feature: domain Description: HNHc Note: nucleases Location: 3438909-3439074 bp Feature: domain Description: HNHc Note: nucleases Location: 3438909-3439074 bp Feature: gene Location: 3440456-3442750 bp Ori: AUT69547.1 Feature: domain Description: PRK12861 Location: 3440471-3442745 bp Feature: domain Description: PRK12 861 Location: 3440471-3442 745 bp Feature: gene Location: 3443001-3443996 bp Ori: AUT69548.1 Gene: thiL Feature: domain Description: PRK05731 Location: 3443007-3443985 bp Feature: domain Description: PRK05731 Location: 3443007-3443985 bp Feature: gene Location: 3579261-3579515 bp Feature: gene Location: 3579703-3579774 bp Feature: gene Location: 3579954-3581258 bp Ori: AUT70334.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3580239-3580878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35802 39-3580878 bp Feature: domain Description: GIIM Note: maturase Location: 3580953-3581172 bp Feature: domain Description: GIIM Note: maturase Location: 3580953-3581172 bp Feature: gene Location: 3581762-3582445 bp Ori: AUT69660.1 Feature: domain Description: OmpR Location: 3581780-3582377 bp Feature: domain Description: OmpR Location: 3581780-3582 377 bp Feature: gene Location: 3582501-3583790 bp Ori: AUT69661.1 Feature: domain Description: hemA Location: 3582507-3583773 bp Feature: domain Description: hemA Location: 3582 507-3583773 bp Feature: gene Location: 3586336-3586935 bp Ori: AUT69665.1 Feature: domain Description: PRK06029 Location: 3586363-3586912 bp Feature: domain Description: PRK0602 9 Location: 3586363-3586912 bp Feature: gene Location: 3587072-3587857 bp Ori: AUT69666.1 Feature: domain Description: 45_DOPA_Dioxygenase Location: 3587087-3587846 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 3587087-3587846 bp Feature: gene Location: 3587970-3589337 bp Ori: AUT69667.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3588303-3588918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3588303-3588918 bp Feature: domain Description: GIIM Note: maturase Location: 3588978-3589173 bp Feature: domain Description: GIIM Note: maturase Location: 3588978-3589173 bp Feature: gene Location: 3589393-3589765 bp Feature: gene Location: 3589799-3591403 bp Ori: AUT69668.1 Feature: domain Description: PotE Location: 3589814-3591272 bp Feature: domain Description: PotE Location: 3589814-35912 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPMT (pfam05724), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), COG2928 (Uncharacterized membrane protein ), R_switched_YjbE (TIGR03717), PilA (COG4969), HNHc (smart00507)
PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), moaC (TIGR00581), degP_htrA_DO (TIGR02037), DUF836 (pfam05768), PRK05433 (GTP-binding protein LepA; Provisional), PRK10861 (signal peptidase I), EarP (TIGR03837), uvrC (TIGR00194)
PRK10832 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase), InsE (COG2963), Xcc1710_like (cd05560), PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895), upstrm_HI1419 (TIGR02683), PRK08181 (transposase; Validated), Barstar (pfam01337)
RNase_Sa (cd00607), PRK12861 (malic enzyme; Reviewed), PRK05731 (thiamine monophosphate kinase; Provisional), OmpR (COG0745), hemA (TIGR01035), PRK06029 (UbiX family flavin prenyltransferase), 45_DOPA_Dioxygenase (cd07363), PotE (COG0531)