myRT

myRT report for GCA_002903105.1_ASM290310v1

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Seq: CP026206.1 Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence (191344 bp)
Overview 1 RT 1: 101250-104489 bp Neighborhood of RT #1 [101250, 104503] InsA RVT-GII PRK10276 Feature: gene Location: 101250-101441 bp Feature: gene Location: 101452-102035 bp Feature: domain Description: InsA Location: 101458-101725 bp Feature: domain Description: InsA Location: 1 01 458-1 01 725 bp Feature: gene Location: 102188-103672 bp Ori: AUV34543.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102590-103280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02590-1 03280 bp Feature: gene Location: 103672-103923 bp Feature: gene Location: 104078-104503 bp Ori: AUV34545.1 Feature: domain Description: PRK10276 Location: 104081-104489 bp Feature: domain Description: PRK1 0276 Location: 1 04081 -1 04489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP026202.1 Escherichia coli strain ECONIH5 chromosome, complete genome (5103533 bp)
Overview 1 RT 1: 109434-114534 bp 2 RT 2: 516152-520332 bp 3 RT 3: 909964-912585 bp 4 RT 4: 1568398-1571624 bp 5 RT 5: 3527349-3530517 bp 6 RT 6: 4508492-4511718 bp 7 RT 7: 4618042-4622951 bp Neighborhood of RT #1 [109434, 116390] TIGR02646 COG3950 RVT-Retrons SSL2 Neighborhood of RT #2 [516152, 520334] umuC PRK10276 RVT-GII hlyE hlyE Neighborhood of RT #3 [909964, 912585] RVT-Retrons HTH_XRE Neighborhood of RT #4 [1568398, 1571624] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [3527349, 3530932] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4508492, 4511718] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #7 [4618042, 4622965] dacD RVT-GII PRK10016 YccC Feature: gene Location: 109434-110084 bp Ori: AUV29437.1 Feature: domain Description: TIGR02646 Location: 109500-109905 bp Feature: domain Description: TIGR02 646 Location: 109500-109905 bp Feature: gene Location: 110087-111739 bp Ori: AUV29438.1 Feature: domain Description: COG3950 Location: 110285-111701 bp Feature: domain Description: COG3950 Location: 1102 85-111701 bp Feature: gene Location: 111736-112671 bp Ori: AUV29439.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111838-112438 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111838-112 438 bp Feature: gene Location: 113131-113356 bp Feature: gene Location: 113400-116390 bp Ori: AUV29440.1 Feature: domain Description: SSL2 Location: 113556-114534 bp Feature: domain Description: SSL2 Location: 113556-114534 bp Feature: gene Location: 516152-517420 bp Ori: AUV29795.1 Feature: domain Description: umuC Location: 516155-517418 bp Feature: domain Description: umuC Location: 516155-517418 bp Feature: gene Location: 517420-517839 bp Ori: AUV29796.1 Feature: domain Description: PRK10276 Location: 517423-517837 bp Feature: domain Description: PRK102 76 Location: 51742 3-517837 bp Feature: gene Location: 517918-519402 bp Ori: AUV29797.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518320-519010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51832 0-519010 bp Feature: gene Location: 519402-519653 bp Feature: gene Location: 519945-520334 bp Ori: AUV29799.1 Feature: domain Description: hlyE Location: 519954-520011 bp Feature: domain Description: hlyE Location: 519954-52 0011 bp Feature: domain Description: hlyE Location: 520014-520332 bp Feature: domain Description: hlyE Location: 52 0014-52 0332 bp Feature: gene Location: 909964-910233 bp Feature: gene Location: 910457-910894 bp Feature: gene Location: 911019-911969 bp Ori: AUV30222.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 911199-911742 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 911199-911742 bp Feature: gene Location: 911947-912255 bp Ori: AUV30223.1 Feature: domain Description: HTH_XRE Location: 911959-912124 bp Feature: domain Description: HTH_XRE Location: 911959-912 12 4 bp Feature: gene Location: 912292-912585 bp Feature: gene Location: 1568398-1568823 bp Feature: domain Description: PHA02517 Location: 1568488-1568824 bp Feature: domain Description: PHA02 517 Location: 1568488-156882 4 bp Feature: gene Location: 1568750-1569187 bp Feature: gene Location: 1569481-1571004 bp Ori: AUV30825.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569754-1570486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569754-1570486 bp Feature: domain Description: GIIM Note: maturase Location: 1570561-1570759 bp Feature: domain Description: GIIM Note: maturase Location: 1570561-1570759 bp Feature: gene Location: 1571085-1571264 bp Feature: domain Description: PHA02517 Location: 1571088-1571265 bp Feature: domain Description: PHA02 517 Location: 1571088-15712 65 bp Feature: gene Location: 1571412-1571624 bp Feature: gene Location: 3527349-3527447 bp Feature: gene Location: 3527500-3527961 bp Feature: domain Description: PHA02517 Location: 3527503-3527953 bp Feature: domain Description: PHA02 517 Location: 352 7503-352 7953 bp Feature: gene Location: 3528042-3529565 bp Ori: AUV32600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3528315-3529047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 8315-352 9047 bp Feature: domain Description: GIIM Note: maturase Location: 3529122-3529320 bp Feature: domain Description: GIIM Note: maturase Location: 352 912 2 -352 932 0 bp Feature: gene Location: 3529859-3530230 bp Feature: gene Location: 3530223-3530932 bp Feature: domain Description: InsE Location: 3530250-3530517 bp Feature: domain Description: InsE Location: 35302 50-3530517 bp Feature: gene Location: 4508492-4508917 bp Feature: domain Description: PHA02517 Location: 4508582-4508918 bp Feature: domain Description: PHA02 517 Location: 4508582 -4508918 bp Feature: gene Location: 4508910-4509281 bp Feature: gene Location: 4509575-4511098 bp Ori: AUV33477.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4509848-4510580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4509848-4510580 bp Feature: domain Description: GIIM Note: maturase Location: 4510658-4510853 bp Feature: domain Description: GIIM Note: maturase Location: 4510658-4510853 bp Feature: gene Location: 4511179-4511358 bp Feature: domain Description: PHA02517 Location: 4511182-4511359 bp Feature: domain Description: PHA02 517 Location: 4511182 -4511359 bp Feature: gene Location: 4511506-4511718 bp Feature: gene Location: 4618042-4619208 bp Ori: AUV33571.1 Feature: domain Description: dacD Location: 4618045-4619206 bp Feature: domain Description: dacD Location: 4618045-46192 06 bp Feature: gene Location: 4619427-4619678 bp Feature: gene Location: 4619678-4621162 bp Ori: AUV33573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4620080-4620770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 0080-462 0770 bp Feature: gene Location: 4621236-4621709 bp Ori: AUV33574.1 Feature: domain Description: PRK10016 Location: 4621239-4621704 bp Feature: domain Description: PRK10016 Location: 462 12 39-462 1704 bp Feature: gene Location: 4621907-4622965 bp Ori: AUV33575.1 Feature: domain Description: YccC Location: 4621913-4622951 bp Feature: domain Description: YccC Location: 462 1913-462 2 951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, hlyE (PRK11376), HTH_XRE (smart00530), PHA02517 (putative transposase OrfB; Reviewed)
GIIM (pfam08388), InsE (COG2963), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)