myRT

myRT report for GCA_002903125.1_ASM290312v1

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Seq: CP026199.1 Escherichia coli strain ECONIH6 chromosome, complete genome (4869246 bp)
Overview 1 RT 1: 698644-704079 bp 2 RT 2: 1651922-1655673 bp 3 RT 3: 2110630-2114007 bp 4 RT 4: 2125576-2133371 bp 5 RT 5: 3324017-3327777 bp 6 RT 6: 3629329-3633620 bp Neighborhood of RT #1 [698644, 704079] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1651922, 1655730] InsE RVT-GII GIIM PHA02517 SH3_2 SH3_2 Neighborhood of RT #3 [2110630, 2114436] COG2085 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [2125576, 2133478] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Neighborhood of RT #5 [3324017, 3327779] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #6 [3629329, 3633620] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 698644-699383 bp Feature: domain Description: InsE Location: 698647-698986 bp Feature: domain Description: InsE Location: 698647-698986 bp Feature: gene Location: 699376-699747 bp Feature: gene Location: 700041-701564 bp Ori: AUV19954.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700314-701046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70031 4-701 046 bp Feature: domain Description: GIIM Note: maturase Location: 701121-701319 bp Feature: domain Description: GIIM Note: maturase Location: 701 1 21 -701 31 9 bp Feature: gene Location: 701654-702127 bp Feature: domain Description: PHA02517 Location: 701660-702125 bp Feature: domain Description: PHA0251 7 Location: 701 660-7021 25 bp Feature: gene Location: 702169-704079 bp Feature: gene Location: 1651922-1652661 bp Feature: domain Description: InsE Location: 1651925-1652261 bp Feature: domain Description: InsE Location: 1 651 925-1 652261 bp Feature: gene Location: 1652654-1653025 bp Feature: gene Location: 1653319-1654842 bp Ori: AUV20831.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653592-1654324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 653592-1 654324 bp Feature: domain Description: GIIM Note: maturase Location: 1654399-1654597 bp Feature: domain Description: GIIM Note: maturase Location: 1 654399-1 654597 bp Feature: gene Location: 1654932-1655405 bp Feature: domain Description: PHA02517 Location: 1654938-1655403 bp Feature: domain Description: PHA0251 7 Location: 1 654938-1 655403 bp Feature: gene Location: 1655448-1655730 bp Feature: domain Description: SH3_2 Location: 1655463-1655526 bp Feature: domain Description: SH3_2 Location: 1 655463-1 655526 bp Feature: domain Description: SH3_2 Location: 1655556-1655673 bp Feature: domain Description: SH3_2 Location: 1 655556-1 655673 bp Feature: gene Location: 2110630-2111043 bp Ori: AUV21244.1 Feature: domain Description: COG2085 Location: 2110729-2110876 bp Feature: domain Description: COG2085 Location: 21 1 0729-21 1 0876 bp Feature: gene Location: 2110970-2111457 bp Feature: domain Description: PHA02517 Location: 2110973-2111144 bp Feature: domain Description: PHA0251 7 Location: 21 1 0973-21 1 1 1 44 bp Feature: gene Location: 2111538-2113061 bp Ori: AUV21245.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2111811-2112543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 81 1 -21 1 2543 bp Feature: domain Description: GIIM Note: maturase Location: 2112618-2112816 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 261 8-21 1 281 6 bp Feature: gene Location: 2113355-2113792 bp Feature: gene Location: 2113719-2114436 bp Feature: domain Description: InsE Location: 2113758-2114007 bp Feature: domain Description: InsE Location: 21 1 3758-21 1 4007 bp Feature: gene Location: 2125576-2126315 bp Feature: domain Description: InsE Location: 2125579-2125918 bp Feature: domain Description: InsE Location: 21 25579-21 2591 8 bp Feature: gene Location: 2126308-2126679 bp Feature: gene Location: 2126973-2128496 bp Ori: AUV21259.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127246-2127978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 27246-21 27978 bp Feature: domain Description: GIIM Note: maturase Location: 2128053-2128251 bp Feature: domain Description: GIIM Note: maturase Location: 21 28053-21 28251 bp Feature: gene Location: 2128586-2129059 bp Feature: domain Description: PHA02517 Location: 2128592-2129057 bp Feature: domain Description: PHA0251 7 Location: 21 28592-21 29057 bp Feature: gene Location: 2129062-2130203 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2129071-2129323 bp Feature: domain Description: Arm-DNA-bind_3 Location: 21 29071 -21 29323 bp Feature: gene Location: 2130658-2131590 bp Ori: AUV21260.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2130760-2131354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 30760-21 31 354 bp Feature: gene Location: 2131592-2132560 bp Feature: gene Location: 2133206-2133478 bp Ori: AUV21262.1 Feature: domain Description: PRK09678 Location: 2133215-2133371 bp Feature: domain Description: PRK09678 Location: 21 3321 5-21 33371 bp Feature: gene Location: 3324017-3324756 bp Feature: domain Description: InsE Location: 3324020-3324359 bp Feature: domain Description: InsE Location: 3324020-3324359 bp Feature: gene Location: 3324749-3325120 bp Feature: gene Location: 3325414-3326937 bp Ori: AUV22343.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3325687-3326419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3325687-332641 9 bp Feature: domain Description: GIIM Note: maturase Location: 3326494-3326692 bp Feature: domain Description: GIIM Note: maturase Location: 3326494-3326692 bp Feature: gene Location: 3327027-3327500 bp Feature: domain Description: PHA02517 Location: 3327033-3327498 bp Feature: domain Description: PHA0251 7 Location: 3327033-3327498 bp Feature: gene Location: 3327543-3327779 bp Feature: domain Description: DUF1016_N Location: 3327600-3327777 bp Feature: domain Description: DUF1 01 6_N Location: 3327600-3327777 bp Feature: gene Location: 3629329-3630558 bp Ori: AUV22635.1 Feature: domain Description: YesM Location: 3629809-3630550 bp Feature: domain Description: YesM Location: 3629809-3630550 bp Feature: gene Location: 3630631-3630819 bp Feature: gene Location: 3631141-3631662 bp Ori: AUV22637.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631147-3631429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631 1 47-3631 429 bp Feature: domain Description: GIIM Note: maturase Location: 3631477-3631657 bp Feature: domain Description: GIIM Note: maturase Location: 3631 477-3631 657 bp Feature: gene Location: 3631838-3632229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3632168-3632228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36321 68-3632228 bp Feature: gene Location: 3632454-3632741 bp Feature: gene Location: 3632715-3633620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), SH3_2 (pfam07653), COG2085 (Predicted dinucleotide-binding enzyme ), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), DUF1016_N (pfam17761)
YesM (COG2972)

Seq: CP026201.1 Escherichia coli strain ECONIH6 plasmid pNDM-d2e9, complete sequence (100989 bp)
Overview 1 RT 1: 70867-78153 bp 2 RT 2: 80668-85026 bp Neighborhood of RT #1 [70867, 78158] DUF1380 RVT_N RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Neighborhood of RT #2 [80668, 85026] PRK13704 PRK09738 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 70867-71289 bp Ori: AUV24123.1 Feature: domain Description: DUF1380 Location: 70870-71167 bp Feature: domain Description: DUF1380 Location: 70870-71167 bp Feature: gene Location: 71286-71477 bp Feature: gene Location: 71791-73458 bp Ori: AUV24125.1 Gene: ltrA Feature: domain Description: RVT_N Location: 71839-72076 bp Feature: domain Description: RVT_N Location: 71839-72 076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72127-72769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 12 7-72 769 bp Feature: domain Description: GIIM Note: maturase Location: 72820-73054 bp Feature: domain Description: GIIM Note: maturase Location: 72 82 0-73054 bp Feature: domain Description: HNHc Note: nucleases Location: 73264-73423 bp Feature: domain Description: HNHc Note: nucleases Location: 732 64-7342 3 bp Feature: gene Location: 74240-74428 bp Feature: gene Location: 74430-74636 bp Feature: gene Location: 74623-74700 bp Feature: gene Location: 75314-77215 bp Ori: AUV24127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75581-76412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75581-76412 bp Feature: domain Description: Intron_maturas2 Location: 76526-76784 bp Feature: domain Description: Intron_maturas2 Location: 7652 6-76784 bp Feature: domain Description: HNHc Note: nucleases Location: 76958-77120 bp Feature: domain Description: HNHc Note: nucleases Location: 76958-7712 0 bp Feature: gene Location: 77365-77862 bp Ori: AUV24128.1 Feature: domain Description: PRK13732 Location: 77368-77860 bp Feature: domain Description: PRK13732 Location: 77368-77860 bp Feature: gene Location: 77925-78158 bp Ori: AUV24129.1 Feature: domain Description: DUF905 Location: 77955-78153 bp Feature: domain Description: DUF905 Location: 77955-78153 bp Feature: gene Location: 80668-81387 bp Ori: AUV24132.1 Feature: domain Description: PRK13704 Location: 80671-81382 bp Feature: domain Description: PRK13704 Location: 80671-81382 bp Feature: gene Location: 81667-81825 bp Ori: AUV24133.1 Feature: domain Description: PRK09738 Location: 81670-81823 bp Feature: domain Description: PRK09738 Location: 81670-8182 3 bp Feature: gene Location: 82220-83887 bp Ori: AUV24134.1 Gene: ltrA Feature: domain Description: RVT_N Location: 82268-82505 bp Feature: domain Description: RVT_N Location: 82 2 68-82 505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82556-83198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 556-83198 bp Feature: domain Description: GIIM Note: maturase Location: 83249-83483 bp Feature: domain Description: GIIM Note: maturase Location: 832 49-83483 bp Feature: domain Description: HNHc Note: nucleases Location: 83693-83852 bp Feature: domain Description: HNHc Note: nucleases Location: 83693-83852 bp Feature: gene Location: 84601-84789 bp Feature: gene Location: 84790-85026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), PRK13704 (plasmid SOS inhibition protein A; Provisional), PRK09738 (small toxic polypeptide; Provisional)