myRT

myRT report for GCA_002903215.1_ASM290321v1

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Seq: CP026235.1 Citrobacter freundii complex sp. CFNIH3 chromosome, complete genome (5334524 bp)
Overview 1 RT 1: 1006784-1012175 bp 2 RT 2: 2894133-2902931 bp 3 RT 3: 3069481-3074702 bp 4 RT 4: 4242384-4248328 bp 5 RT 5: 4489787-4495047 bp Neighborhood of RT #1 [1006784, 1012258] PHA02517 RVT-GII GIIM fruct_sucro_rep scrB_fam Neighborhood of RT #2 [2894133, 2903326] InsE RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Neighborhood of RT #3 [3069481, 3074702] HTH_Tnp_1 HTH_21 RVT-GII GIIM Neighborhood of RT #4 [4242384, 4248414] PRK15442 PRK13746 RVT-GII GIIM efflux_Bcr_CflA LbH_XAT Neighborhood of RT #5 [4489787, 4495047] PRK10341 PHA02517 RVT-GII GIIM Feature: gene Location: 1006784-1007209 bp Feature: domain Description: PHA02517 Location: 1006874-1007210 bp Feature: domain Description: PHA0251 7 Location: 1 006874-1 00721 0 bp Feature: gene Location: 1007142-1007573 bp Feature: gene Location: 1007867-1009390 bp Ori: AUV25069.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008140-1008872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0081 40-1 008872 bp Feature: domain Description: GIIM Note: maturase Location: 1008947-1009145 bp Feature: domain Description: GIIM Note: maturase Location: 1 008947-1 0091 45 bp Feature: gene Location: 1009824-1010828 bp Ori: AUV25070.1 Feature: domain Description: fruct_sucro_rep Location: 1009845-1010823 bp Feature: domain Description: fruct_sucro_rep Location: 1 009845-1 01 0823 bp Feature: gene Location: 1010858-1012258 bp Ori: AUV25071.1 Feature: domain Description: scrB_fam Location: 1010903-1012175 bp Feature: domain Description: scrB_fam Location: 1 01 0903-1 01 21 75 bp Feature: gene Location: 2894133-2894818 bp Feature: domain Description: InsE Location: 2894145-2894409 bp Feature: domain Description: InsE Location: 28941 45-2894409 bp Feature: gene Location: 2894811-2895182 bp Feature: gene Location: 2895476-2896999 bp Ori: AUV26743.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2895749-2896481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2895749-2896481 bp Feature: domain Description: GIIM Note: maturase Location: 2896556-2896754 bp Feature: domain Description: GIIM Note: maturase Location: 2896556-2896754 bp Feature: gene Location: 2897080-2897538 bp Feature: domain Description: PHA02517 Location: 2897083-2897530 bp Feature: domain Description: PHA0251 7 Location: 2897083-2897530 bp Feature: gene Location: 2897591-2903326 bp Ori: AUV26744.1 Feature: domain Description: DUF4011 Location: 2897681-2898515 bp Feature: domain Description: DUF401 1 Location: 2897681 -289851 5 bp Feature: domain Description: DEXXQc_SF1 Location: 2898872-2901974 bp Feature: domain Description: DEXXQc_SF1 Location: 2898872-2901 974 bp Feature: domain Description: SF1_C_Upf1 Location: 2901983-2902511 bp Feature: domain Description: SF1 _C_Upf1 Location: 2901 983-290251 1 bp Feature: domain Description: MTES_1575 Location: 2902640-2902931 bp Feature: domain Description: MTES_1 575 Location: 2902640-2902931 bp Feature: gene Location: 3069481-3070166 bp Feature: domain Description: HTH_Tnp_1 Location: 3069493-3069688 bp Feature: domain Description: HTH_Tnp_1 Location: 3069493-3069688 bp Feature: domain Description: HTH_21 Location: 3069892-3070036 bp Feature: domain Description: HTH_21 Location: 3069892-3070036 bp Feature: gene Location: 3070159-3070530 bp Feature: gene Location: 3070824-3072347 bp Ori: AUV26913.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071097-3071829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071 097-3071 829 bp Feature: domain Description: GIIM Note: maturase Location: 3071904-3072102 bp Feature: domain Description: GIIM Note: maturase Location: 3071 904-30721 02 bp Feature: gene Location: 3072428-3072881 bp Feature: gene Location: 3073164-3074702 bp Feature: gene Location: 4242384-4243250 bp Ori: AUV29020.1 Feature: domain Description: PRK15442 Location: 4242417-4243224 bp Feature: domain Description: PRK1 5442 Location: 424241 7-4243224 bp Feature: gene Location: 4243368-4244159 bp Ori: AUV29021.1 Feature: domain Description: PRK13746 Location: 4243371-4244151 bp Feature: domain Description: PRK1 3746 Location: 4243371 -42441 51 bp Feature: gene Location: 4244248-4245597 bp Ori: AUV27897.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4244530-4245148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4244530-42451 48 bp Feature: domain Description: GIIM Note: maturase Location: 4245196-4245400 bp Feature: domain Description: GIIM Note: maturase Location: 42451 96-4245400 bp Feature: gene Location: 4246398-4247657 bp Ori: AUV27898.1 Gene: cmlA Feature: domain Description: efflux_Bcr_CflA Location: 4246431-4247574 bp Feature: domain Description: efflux_Bcr_CflA Location: 4246431 -4247574 bp Feature: gene Location: 4247782-4248414 bp Ori: AUV27899.1 Gene: catB Feature: domain Description: LbH_XAT Location: 4247848-4248328 bp Feature: domain Description: LbH_XAT Location: 4247848-4248328 bp Feature: gene Location: 4489787-4490725 bp Ori: AUV28114.1 Feature: domain Description: PRK10341 Location: 4489790-4490720 bp Feature: domain Description: PRK1 0341 Location: 4489790-4490720 bp Feature: gene Location: 4491871-4492356 bp Feature: domain Description: PHA02517 Location: 4491883-4492348 bp Feature: domain Description: PHA0251 7 Location: 4491 883-4492348 bp Feature: gene Location: 4492437-4493960 bp Ori: AUV28115.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4492710-4493442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449271 0-4493442 bp Feature: domain Description: GIIM Note: maturase Location: 4493517-4493715 bp Feature: domain Description: GIIM Note: maturase Location: 449351 7-449371 5 bp Feature: gene Location: 4494254-4494664 bp Feature: gene Location: 4494618-4495047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fruct_sucro_rep (TIGR02417), scrB_fam (TIGR01322), InsE (COG2963), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)
HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), PRK15442 (beta-lactamase TEM; Provisional), PRK13746 (aminoglycoside resistance protein; Provisional), efflux_Bcr_CflA (TIGR00710), LbH_XAT (cd03349), PRK10341 (transcriptional regulator TdcA)