myRT

myRT report for GCA_002934585.1_ASM293458v1

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Seq: CP026212.1 Citrobacter sp. CFNIH10 plasmid pCIT-a850, complete sequence (126940 bp)
Overview 1 RT 1: 110027-113500 bp Neighborhood of RT #1 [110027, 113499] PHA02517 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 110027-110239 bp Feature: gene Location: 110387-110566 bp Feature: domain Description: PHA02517 Location: 110390-110567 bp Feature: domain Description: PHA0251 7 Location: 1 1 0390-1 1 0567 bp Feature: gene Location: 110647-112170 bp Ori: AUZ62647.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110920-111652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0920-1 1 1 652 bp Feature: domain Description: GIIM Note: maturase Location: 111727-111925 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 727-1 1 1 925 bp Feature: gene Location: 112464-112901 bp Feature: gene Location: 112828-113499 bp Feature: domain Description: InsE Location: 112840-113092 bp Feature: domain Description: InsE Location: 1 1 2840-1 1 3092 bp Feature: domain Description: PHA02517 Location: 113164-113500 bp Feature: domain Description: PHA0251 7 Location: 1 1 31 64-1 1 3500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP026213.1 Citrobacter sp. CFNIH10 plasmid pKPC-933d, complete sequence (221962 bp)
Overview 1 RT 1: 74059-77804 bp Neighborhood of RT #1 [74059, 77804] PHA02517 RVT-GII GIIM Feature: gene Location: 74059-74484 bp Feature: gene Location: 74637-75113 bp Feature: domain Description: PHA02517 Location: 74640-75105 bp Feature: domain Description: PHA02 517 Location: 74640-75105 bp Feature: gene Location: 75194-76717 bp Ori: AUZ62752.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75467-76199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75467-76199 bp Feature: domain Description: GIIM Note: maturase Location: 76274-76472 bp Feature: domain Description: GIIM Note: maturase Location: 762 74-76472 bp Feature: gene Location: 77011-77421 bp Feature: gene Location: 77375-77804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP026211.1 Citrobacter sp. CFNIH10 plasmid pCIT-eb1a, complete sequence (51267 bp)
Overview 1 RT 1: 14523-17618 bp Neighborhood of RT #1 [14523, 18012] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 14523-14735 bp Feature: gene Location: 14883-15062 bp Feature: domain Description: PHA02517 Location: 14886-15063 bp Feature: domain Description: PHA02517 Location: 14886-15063 bp Feature: gene Location: 15143-16666 bp Ori: AUZ62485.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15416-16148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15416-16148 bp Feature: domain Description: GIIM Note: maturase Location: 16223-16421 bp Feature: domain Description: GIIM Note: maturase Location: 16223 -16421 bp Feature: gene Location: 16960-17397 bp Feature: gene Location: 17324-18012 bp Feature: domain Description: InsE Location: 17333-17618 bp Feature: domain Description: InsE Location: 173 3 3 -17618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP026216.1 Citrobacter sp. CFNIH10 chromosome, complete genome (5246201 bp)
Overview 1 RT 1: 60588-67481 bp 2 RT 2: 1186555-1191145 bp 3 RT 3: 1731556-1735888 bp 4 RT 4: 4437835-4443581 bp Neighborhood of RT #1 [60588, 67480] PinE COG4644 DDE_Tnp_Tn3 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1186555, 1191153] InsE RVT-GII GIIM PHA02517 YadS Neighborhood of RT #3 [1731556, 1735888] DNA_pol_A_pol_I_A DNA_pol_A_pol_I_A PHA02517 RVT-GII GIIM Neighborhood of RT #4 [4437835, 4443581] COG4733 PHA02517 RVT-GII GIIM Feature: gene Location: 60588-61154 bp Ori: AUZ63000.1 Feature: domain Description: PinE Location: 60591-61137 bp Feature: domain Description: PinE Location: 60591-61137 bp Feature: gene Location: 61318-64326 bp Ori: AUZ63001.1 Feature: domain Description: COG4644 Location: 61393-61672 bp Feature: domain Description: COG4 64 4 Location: 61393-61672 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 63079-64246 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 63079-64 24 6 bp Feature: gene Location: 64874-66397 bp Ori: AUZ63002.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65147-65879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6514 7-65879 bp Feature: domain Description: GIIM Note: maturase Location: 65954-66152 bp Feature: domain Description: GIIM Note: maturase Location: 65954 -66152 bp Feature: gene Location: 66691-67122 bp Feature: gene Location: 67055-67480 bp Feature: domain Description: PHA02517 Location: 67145-67481 bp Feature: domain Description: PHA02517 Location: 6714 5-674 81 bp Feature: gene Location: 1186555-1187234 bp Feature: domain Description: InsE Location: 1186567-1186825 bp Feature: domain Description: InsE Location: 1186567-1186825 bp Feature: gene Location: 1187188-1187598 bp Feature: gene Location: 1187892-1189415 bp Ori: AUZ64002.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1188165-1188897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1188165-1188897 bp Feature: domain Description: GIIM Note: maturase Location: 1188972-1189170 bp Feature: domain Description: GIIM Note: maturase Location: 1188972-1189170 bp Feature: gene Location: 1189496-1189972 bp Feature: domain Description: PHA02517 Location: 1189499-1189964 bp Feature: domain Description: PHA02517 Location: 11894 99-1189964 bp Feature: gene Location: 1190536-1191153 bp Ori: AUZ64003.1 Feature: domain Description: YadS Location: 1190539-1191145 bp Feature: domain Description: YadS Location: 1190539-119114 5 bp Feature: gene Location: 1731556-1732542 bp Ori: AUZ64451.1 Feature: domain Description: DNA_pol_A_pol_I_A Location: 1731565-1731904 bp Feature: domain Description: DNA_pol_A_pol_I_A Location: 1731565-1731904 bp Feature: domain Description: DNA_pol_A_pol_I_A Location: 1732036-1732534 bp Feature: domain Description: DNA_pol_A_pol_I_A Location: 1732036-1732534 bp Feature: gene Location: 1732721-1733197 bp Feature: domain Description: PHA02517 Location: 1732724-1733189 bp Feature: domain Description: PHA02517 Location: 1732724 -1733189 bp Feature: gene Location: 1733278-1734801 bp Ori: AUZ64452.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733551-1734283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1733551-1734 283 bp Feature: domain Description: GIIM Note: maturase Location: 1734358-1734556 bp Feature: domain Description: GIIM Note: maturase Location: 1734 358-1734 556 bp Feature: gene Location: 1735095-1735505 bp Feature: gene Location: 1735459-1735888 bp Feature: gene Location: 4437835-4440395 bp Feature: domain Description: COG4733 Location: 4437838-4439737 bp Feature: domain Description: COG4 733 Location: 4 4 37838-4 4 39737 bp Feature: gene Location: 4440414-4440890 bp Feature: domain Description: PHA02517 Location: 4440417-4440882 bp Feature: domain Description: PHA02517 Location: 4 4 4 04 17-4 4 4 0882 bp Feature: gene Location: 4440971-4442494 bp Ori: AUZ66957.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4441244-4441976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 4 124 4 -4 4 4 1976 bp Feature: domain Description: GIIM Note: maturase Location: 4442051-4442249 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 4 2051-4 4 4 224 9 bp Feature: gene Location: 4442788-4443198 bp Feature: gene Location: 4443152-4443581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), COG4644 (Transposase and inactivated derivatives, TnpA family ), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), YadS (COG2860), DNA_pol_A_pol_I_A (cd08642), COG4733 (Phage-related protein, tail component )