myRT

myRT report for GCA_002944765.1_ASM294476v1

Download annotations/find similar RTs

Seq: CP026544.1 Cupriavidus metallidurans strain Ni-2 chromosome, complete genome (6543877 bp)
Overview 1 RT 1: 319077-324105 bp 2 RT 2: 1398371-1401106 bp 3 RT 3: 1995297-1999255 bp 4 RT 4: 4766470-4773357 bp 5 RT 5: 4941445-4950263 bp 6 RT 6: 5903255-5910487 bp 7 RT 7: 6361249-6365775 bp Neighborhood of RT #1 [319077, 324122] GRX_bact RVT_N RVT-GII GIIM HNHc PRK05751 gpsA Neighborhood of RT #2 [1398371, 1401120] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #3 [1995297, 1999278] Recombinase RVT-GII GIIM DDE_Tnp_ISL3 Neighborhood of RT #4 [4766470, 4773365] PRK06349 PRK09265 RVT_N RVT-GII GIIM HNHc Xcc1710_like Bcp Neighborhood of RT #5 [4941445, 4950370] MATE_NorM_like gltX RVT_N RVT-GII GIIM HNHc RssA Spr Neighborhood of RT #6 [5903255, 5910492] RpmA rplU RVT_N RVT-GII GIIM HNHc PRK10888 type_IV_pilB Neighborhood of RT #7 [6361249, 6365775] rve RVT-Retrons AlpA Feature: gene Location: 319077-319334 bp Ori: AVA32409.1 Gene: grxC Feature: domain Description: GRX_bact Location: 319089-319326 bp Feature: domain Description: GRX_bact Location: 31 9089-31 9326 bp Feature: gene Location: 320200-320538 bp Feature: gene Location: 320583-322298 bp Ori: AVA32411.1 Gene: ltrA Feature: domain Description: RVT_N Location: 320640-320883 bp Feature: domain Description: RVT_N Location: 320640-320883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320928-321576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320928-321 576 bp Feature: domain Description: GIIM Note: maturase Location: 321630-321861 bp Feature: domain Description: GIIM Note: maturase Location: 321 630-321 861 bp Feature: domain Description: HNHc Note: nucleases Location: 322080-322245 bp Feature: domain Description: HNHc Note: nucleases Location: 322080-322245 bp Feature: gene Location: 322457-322975 bp Ori: AVA32412.1 Feature: domain Description: PRK05751 Location: 322466-322919 bp Feature: domain Description: PRK05751 Location: 322466-32291 9 bp Feature: gene Location: 323094-324122 bp Ori: AVA32413.1 Feature: domain Description: gpsA Location: 323097-324105 bp Feature: domain Description: gpsA Location: 323097-3241 05 bp Feature: gene Location: 1398371-1398505 bp Feature: gene Location: 1398712-1399029 bp Feature: gene Location: 1399026-1400216 bp Ori: AVA33334.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1399278-1399965 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 399278-1 399965 bp Feature: gene Location: 1400404-1400790 bp Ori: AVA33335.1 Feature: domain Description: Avd_like Location: 1400431-1400737 bp Feature: domain Description: Avd_like Location: 1 400431 -1 400737 bp Feature: gene Location: 1400809-1401120 bp Ori: AVA37645.1 Feature: domain Description: DUF1566 Location: 1400884-1401106 bp Feature: domain Description: DUF1 566 Location: 1 400884-1 401 1 06 bp Feature: gene Location: 1995297-1995552 bp Feature: gene Location: 1995559-1996889 bp Feature: domain Description: Recombinase Location: 1995739-1996093 bp Feature: domain Description: Recombinase Location: 1 995739-1 996093 bp Feature: gene Location: 1996858-1997508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996861-1997086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 996861 -1 997086 bp Feature: domain Description: GIIM Note: maturase Location: 1997149-1997362 bp Feature: domain Description: GIIM Note: maturase Location: 1 9971 49-1 997362 bp Feature: gene Location: 1998308-1998541 bp Feature: gene Location: 1998886-1999278 bp Ori: AVA33844.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 1999075-1999255 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 999075-1 999255 bp Feature: gene Location: 4766470-4767780 bp Ori: AVA36085.1 Feature: domain Description: PRK06349 Location: 4766473-4767769 bp Feature: domain Description: PRK06349 Location: 4766473-4767769 bp Feature: gene Location: 4767831-4769060 bp Ori: AVA36086.1 Feature: domain Description: PRK09265 Location: 4767837-4769043 bp Feature: domain Description: PRK09265 Location: 4767837-4769043 bp Feature: gene Location: 4769264-4770988 bp Ori: AVA36087.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4769321-4769564 bp Feature: domain Description: RVT_N Location: 4769321 -4769564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4769609-4770257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4769609-4770257 bp Feature: domain Description: GIIM Note: maturase Location: 4770311-4770542 bp Feature: domain Description: GIIM Note: maturase Location: 477031 1 -4770542 bp Feature: domain Description: HNHc Note: nucleases Location: 4770767-4770926 bp Feature: domain Description: HNHc Note: nucleases Location: 4770767-4770926 bp Feature: gene Location: 4772322-4772702 bp Ori: AVA36088.1 Feature: domain Description: Xcc1710_like Location: 4772361-4772685 bp Feature: domain Description: Xcc1 71 0_like Location: 4772361 -4772685 bp Feature: gene Location: 4772904-4773365 bp Ori: AVA36089.1 Feature: domain Description: Bcp Location: 4772910-4773357 bp Feature: domain Description: Bcp Location: 477291 0-4773357 bp Feature: gene Location: 4941445-4942794 bp Ori: AVA36227.1 Feature: domain Description: MATE_NorM_like Location: 4941469-4942786 bp Feature: domain Description: MATE_NorM_like Location: 4941 469-4942786 bp Feature: gene Location: 4944061-4945458 bp Ori: AVA36228.1 Feature: domain Description: gltX Location: 4944067-4945453 bp Feature: domain Description: gltX Location: 4944067-4945453 bp Feature: gene Location: 4945610-4947310 bp Ori: AVA36229.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4945667-4945910 bp Feature: domain Description: RVT_N Location: 4945667-494591 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4945955-4946603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4945955-4946603 bp Feature: domain Description: GIIM Note: maturase Location: 4946657-4946888 bp Feature: domain Description: GIIM Note: maturase Location: 4946657-4946888 bp Feature: domain Description: HNHc Note: nucleases Location: 4947113-4947272 bp Feature: domain Description: HNHc Note: nucleases Location: 49471 1 3-4947272 bp Feature: gene Location: 4948606-4949556 bp Ori: AVA36230.1 Feature: domain Description: RssA Location: 4948735-4949521 bp Feature: domain Description: RssA Location: 4948735-4949521 bp Feature: gene Location: 4949690-4950370 bp Ori: AVA36231.1 Feature: domain Description: Spr Location: 4949888-4950263 bp Feature: domain Description: Spr Location: 4949888-4950263 bp Feature: gene Location: 5903255-5903515 bp Ori: AVA37039.1 Feature: domain Description: RpmA Location: 5903258-5903510 bp Feature: domain Description: RpmA Location: 5903258-590351 0 bp Feature: gene Location: 5903567-5903878 bp Ori: AVA37040.1 Gene: rplU Feature: domain Description: rplU Location: 5903570-5903873 bp Feature: domain Description: rplU Location: 5903570-5903873 bp Feature: gene Location: 5905482-5907182 bp Ori: AVA37041.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5905539-5905782 bp Feature: domain Description: RVT_N Location: 5905539-5905782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5905827-5906475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5905827-5906475 bp Feature: domain Description: GIIM Note: maturase Location: 5906529-5906760 bp Feature: domain Description: GIIM Note: maturase Location: 5906529-5906760 bp Feature: domain Description: HNHc Note: nucleases Location: 5906985-5907144 bp Feature: domain Description: HNHc Note: nucleases Location: 5906985-59071 44 bp Feature: gene Location: 5907346-5908275 bp Ori: AVA37042.1 Feature: domain Description: PRK10888 Location: 5907349-5908270 bp Feature: domain Description: PRK1 0888 Location: 5907349-5908270 bp Feature: gene Location: 5908771-5910492 bp Ori: AVA37043.1 Gene: pilB Feature: domain Description: type_IV_pilB Location: 5908780-5910487 bp Feature: domain Description: type_IV_pilB Location: 5908780-591 0487 bp Feature: gene Location: 6361249-6362688 bp Ori: AVA37421.1 Feature: domain Description: rve Location: 6361777-6362131 bp Feature: domain Description: rve Location: 6361 777-63621 31 bp Feature: gene Location: 6362800-6363111 bp Feature: gene Location: 6363481-6364626 bp Ori: AVA37423.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6363949-6364162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6363949-63641 62 bp Feature: gene Location: 6364879-6365142 bp Ori: AVA37424.1 Feature: domain Description: AlpA Location: 6364903-6365059 bp Feature: domain Description: AlpA Location: 6364903-6365059 bp Feature: gene Location: 6365200-6365775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GRX_bact (TIGR02181), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05751 (preprotein translocase subunit SecB; Validated), gpsA (PRK00094), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)
Recombinase (pfam07508), DDE_Tnp_ISL3 (pfam01610), PRK06349 (homoserine dehydrogenase; Provisional), PRK09265 (aminotransferase AlaT; Validated), Xcc1710_like (cd05560), Bcp (COG1225), MATE_NorM_like (cd13137), gltX (PRK14895), RssA (COG1752), Spr (COG0791)
RpmA (COG0211), rplU (PRK05573), PRK10888 (octaprenyl diphosphate synthase; Provisional), type_IV_pilB (TIGR02538), rve (pfam00665), RVT-Retrons, AlpA (COG3311)