myRT

myRT report for GCA_002944845.1_ASM294484v1

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Seq: CP026586.1 Klebsiella pneumoniae strain NUHL30457 chromosome, complete genome (5302595 bp)
Overview 1 RT 1: 712397-720091 bp Neighborhood of RT #1 [712397, 720091] FimC FimD RVT-UG4 EAL Feature: gene Location: 712397-713161 bp Ori: AVB70506.1 Feature: domain Description: FimC Location: 712442-713144 bp Feature: domain Description: FimC Location: 71 2442-71 31 44 bp Feature: gene Location: 713208-715802 bp Ori: AVB70507.1 Feature: domain Description: FimD Location: 713250-715791 bp Feature: domain Description: FimD Location: 71 3250-71 5791 bp Feature: gene Location: 715802-717832 bp Ori: AVB74682.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 716210-716654 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 71 621 0-71 6654 bp Feature: gene Location: 718469-719894 bp Feature: domain Description: EAL Location: 719153-719423 bp Feature: domain Description: EAL Location: 71 91 53-71 9423 bp Feature: gene Location: 719990-720091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, EAL (smart00052)

Seq: CP026589.1 Klebsiella pneumoniae strain NUHL30457 plasmid p3, complete sequence (89247 bp)
Overview 1 RT 1: 26322-30534 bp Neighborhood of RT #1 [26322, 30534] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 26322-26744 bp Ori: AVB75277.1 Feature: domain Description: DUF1380 Location: 26325-26619 bp Feature: domain Description: DUF1380 Location: 2 632 5-2 6619 bp Feature: gene Location: 26741-26923 bp Feature: gene Location: 27237-28904 bp Ori: AVB75279.1 Gene: ltrA Feature: domain Description: RVT_N Location: 27285-27522 bp Feature: domain Description: RVT_N Location: 2 72 85-2 752 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27573-28215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7573-2 82 15 bp Feature: domain Description: GIIM Note: maturase Location: 28266-28500 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 66-2 8500 bp Feature: domain Description: HNHc Note: nucleases Location: 28710-28869 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8710-2 8869 bp Feature: gene Location: 29784-30041 bp Feature: gene Location: 30304-30534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)