myRT

myRT report for GCA_002945135.3_ASM294513v3

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Seq: CP026580.3 Escherichia coli strain WCHEC005237 chromosome, complete genome (4832939 bp)
Overview 1 RT 1: 516502-520262 bp 2 RT 2: 822411-826702 bp 3 RT 3: 2722586-2728021 bp 4 RT 4: 3676926-3680593 bp 5 RT 5: 4135651-4139082 bp 6 RT 6: 4150619-4158392 bp Neighborhood of RT #1 [516502, 520264] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [822411, 826702] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2722586, 2728021] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3676926, 3680593] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4135651, 4139479] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4150619, 4158499] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 516502-517241 bp Feature: domain Description: InsE Location: 516505-516844 bp Feature: domain Description: InsE Location: 51 6505-51 6844 bp Feature: gene Location: 517234-517605 bp Feature: gene Location: 517914-519422 bp Ori: AVB44013.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518172-518904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 81 72-51 8904 bp Feature: domain Description: GIIM Note: maturase Location: 518979-519177 bp Feature: domain Description: GIIM Note: maturase Location: 51 8979-51 91 77 bp Feature: gene Location: 519512-519985 bp Feature: domain Description: PHA02517 Location: 519518-519983 bp Feature: domain Description: PHA0251 7 Location: 51 951 8-51 9983 bp Feature: gene Location: 520028-520264 bp Feature: domain Description: DUF1016_N Location: 520085-520262 bp Feature: domain Description: DUF1 01 6_N Location: 520085-520262 bp Feature: gene Location: 822411-823640 bp Ori: AVB44303.1 Feature: domain Description: YesM Location: 822891-823632 bp Feature: domain Description: YesM Location: 822891 -823632 bp Feature: gene Location: 823713-823901 bp Feature: gene Location: 824223-824744 bp Ori: AVB44305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824229-824511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824229-82451 1 bp Feature: domain Description: GIIM Note: maturase Location: 824559-824739 bp Feature: domain Description: GIIM Note: maturase Location: 824559-824739 bp Feature: gene Location: 824920-825311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825250-825310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825250-82531 0 bp Feature: gene Location: 825536-825823 bp Feature: gene Location: 825797-826702 bp Feature: gene Location: 2722586-2723325 bp Feature: domain Description: InsE Location: 2722589-2722928 bp Feature: domain Description: InsE Location: 2722589-2722928 bp Feature: gene Location: 2723318-2723689 bp Feature: gene Location: 2723998-2725506 bp Ori: AVB46002.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2724256-2724988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2724256-2724988 bp Feature: domain Description: GIIM Note: maturase Location: 2725063-2725261 bp Feature: domain Description: GIIM Note: maturase Location: 2725063-2725261 bp Feature: gene Location: 2725596-2726069 bp Feature: domain Description: PHA02517 Location: 2725602-2726067 bp Feature: domain Description: PHA0251 7 Location: 2725602-2726067 bp Feature: gene Location: 2726111-2728021 bp Feature: gene Location: 3676926-3677665 bp Feature: domain Description: InsE Location: 3676929-3677268 bp Feature: domain Description: InsE Location: 3676929-3677268 bp Feature: gene Location: 3677658-3678029 bp Feature: gene Location: 3678338-3679846 bp Ori: AVB46883.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3678596-3679328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3678596-3679328 bp Feature: domain Description: GIIM Note: maturase Location: 3679403-3679601 bp Feature: domain Description: GIIM Note: maturase Location: 3679403-3679601 bp Feature: gene Location: 3679936-3680409 bp Feature: domain Description: PHA02517 Location: 3679942-3680407 bp Feature: domain Description: PHA0251 7 Location: 3679942-3680407 bp Feature: gene Location: 3680375-3680593 bp Feature: gene Location: 4135651-4135908 bp Feature: gene Location: 4135991-4136478 bp Feature: domain Description: PHA02517 Location: 4135994-4136165 bp Feature: domain Description: PHA0251 7 Location: 41 35994-41 361 65 bp Feature: gene Location: 4136559-4138067 bp Ori: AVB47296.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4136817-4137549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 3681 7-41 37549 bp Feature: domain Description: GIIM Note: maturase Location: 4137624-4137822 bp Feature: domain Description: GIIM Note: maturase Location: 41 37624-41 37822 bp Feature: gene Location: 4138376-4138747 bp Feature: gene Location: 4138740-4139479 bp Feature: domain Description: InsE Location: 4138743-4139082 bp Feature: domain Description: InsE Location: 41 38743-41 39082 bp Feature: gene Location: 4150619-4151336 bp Feature: domain Description: InsE Location: 4150658-4150907 bp Feature: domain Description: InsE Location: 41 50658-41 50907 bp Feature: gene Location: 4151332-4151700 bp Feature: gene Location: 4152009-4153517 bp Ori: AVB47310.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4152267-4152999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 52267-41 52999 bp Feature: domain Description: GIIM Note: maturase Location: 4153074-4153272 bp Feature: domain Description: GIIM Note: maturase Location: 41 53074-41 53272 bp Feature: gene Location: 4153607-4154080 bp Feature: domain Description: PHA02517 Location: 4153613-4154078 bp Feature: domain Description: PHA0251 7 Location: 41 5361 3-41 54078 bp Feature: gene Location: 4154122-4155224 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4154131-4154383 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 541 31 -41 54383 bp Feature: gene Location: 4155679-4156611 bp Ori: AVB47311.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4155781-4156375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 55781 -41 56375 bp Feature: gene Location: 4156613-4157581 bp Feature: gene Location: 4158227-4158499 bp Ori: AVB47313.1 Feature: domain Description: PRK09678 Location: 4158236-4158392 bp Feature: domain Description: PRK09678 Location: 41 58236-41 58392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)