myRT

myRT report for GCA_002946835.1_ASM294683v1

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Seq: CP026652.1 Streptomyces dengpaensis strain XZHG99 chromosome, complete genome (8541354 bp)
Overview 1 RT 1: 130506-135460 bp 2 RT 2: 185736-190565 bp 3 RT 3: 890301-897172 bp 4 RT 4: 8442807-8448430 bp 5 RT 5: 8518395-8523549 bp Neighborhood of RT #1 [130506, 135636] COG3293 COG3293 Ser_Recombinase Recombinase Zn_ribbon_recom Recombinase RVT_N RVT-GII GIIM PinE Neighborhood of RT #2 [185736, 190573] PinE INT_Cre_C RVT-GII GIIM PQQ_3 PQQ_3 PQQ_3 Neighborhood of RT #3 [890301, 897177] crotonase-like RVT-GII GIIM MFS_MucK gabD1 Neighborhood of RT #4 [8442807, 8448606] RVT_N RVT-GII GIIM Recombinase Zn_ribbon_recom Recombinase HTH_29 DDE_3 Neighborhood of RT #5 [8518395, 8523578] SigE-fam_strep HTH_OrfB_IS605 RVT_N RVT-GII GIIM HNH InsQ COG3293 COG3293 Feature: gene Location: 130506-131486 bp Ori: AVH54587.1 Feature: domain Description: COG3293 Location: 130620-130962 bp Feature: domain Description: COG3293 Location: 1 30620-1 30962 bp Feature: domain Description: COG3293 Location: 131013-131301 bp Feature: domain Description: COG3293 Location: 1 31 01 3-1 31 301 bp Feature: gene Location: 131300-133216 bp Ori: AVH54588.1 Feature: domain Description: Ser_Recombinase Location: 131402-131540 bp Feature: domain Description: Ser_Recombinase Location: 1 31 402-1 31 540 bp Feature: domain Description: Recombinase Location: 131651-132017 bp Feature: domain Description: Recombinase Location: 1 31 651 -1 3201 7 bp Feature: domain Description: Zn_ribbon_recom Location: 132074-132245 bp Feature: domain Description: Zn_ribbon_recom Location: 1 32074-1 32245 bp Feature: domain Description: Recombinase Location: 132773-132911 bp Feature: domain Description: Recombinase Location: 1 32773-1 3291 1 bp Feature: gene Location: 133246-134682 bp Ori: AVH54589.1 Gene: ltrA Feature: domain Description: RVT_N Location: 133267-133468 bp Feature: domain Description: RVT_N Location: 1 33267-1 33468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133567-134254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33567-1 34254 bp Feature: domain Description: GIIM Note: maturase Location: 134326-134557 bp Feature: domain Description: GIIM Note: maturase Location: 1 34326-1 34557 bp Feature: gene Location: 134721-134991 bp Feature: gene Location: 135112-135636 bp Ori: AVH54590.1 Feature: domain Description: PinE Location: 135181-135460 bp Feature: domain Description: PinE Location: 1 351 81 -1 35460 bp Feature: gene Location: 185736-186290 bp Ori: AVH54628.1 Feature: domain Description: PinE Location: 185814-186246 bp Feature: domain Description: PinE Location: 1 8581 4-1 86246 bp Feature: gene Location: 186944-187576 bp Ori: AVH54629.1 Feature: domain Description: INT_Cre_C Location: 187148-187562 bp Feature: domain Description: INT_Cre_C Location: 1 871 48-1 87562 bp Feature: gene Location: 188024-189457 bp Ori: AVH54630.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188345-189029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88345-1 89029 bp Feature: domain Description: GIIM Note: maturase Location: 189101-189332 bp Feature: domain Description: GIIM Note: maturase Location: 1 891 01 -1 89332 bp Feature: gene Location: 189542-189811 bp Feature: gene Location: 190115-190573 bp Ori: AVH54631.1 Feature: domain Description: PQQ_3 Location: 190202-190307 bp Feature: domain Description: PQQ_3 Location: 1 90202-1 90307 bp Feature: domain Description: PQQ_3 Location: 190310-190445 bp Feature: domain Description: PQQ_3 Location: 1 9031 0-1 90445 bp Feature: domain Description: PQQ_3 Location: 190448-190565 bp Feature: domain Description: PQQ_3 Location: 1 90448-1 90565 bp Feature: gene Location: 890301-891023 bp Ori: AVH55132.1 Feature: domain Description: crotonase-like Location: 890349-890901 bp Feature: domain Description: crotonase-like Location: 890349-890901 bp Feature: gene Location: 891843-892112 bp Feature: gene Location: 892197-893630 bp Ori: AVH55133.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892518-893202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89251 8-893202 bp Feature: domain Description: GIIM Note: maturase Location: 893274-893505 bp Feature: domain Description: GIIM Note: maturase Location: 893274-893505 bp Feature: gene Location: 893798-895093 bp Ori: AVH55134.1 Feature: domain Description: MFS_MucK Location: 893903-895070 bp Feature: domain Description: MFS_MucK Location: 893903-895070 bp Feature: gene Location: 895801-897177 bp Ori: AVH55135.1 Feature: domain Description: gabD1 Location: 895804-897172 bp Feature: domain Description: gabD1 Location: 895804-8971 72 bp Feature: gene Location: 8442807-8442995 bp Feature: gene Location: 8443435-8443705 bp Feature: gene Location: 8443744-8445180 bp Ori: AVH60827.1 Gene: ltrA Feature: domain Description: RVT_N Location: 8443765-8443966 bp Feature: domain Description: RVT_N Location: 8443765-8443966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8444065-8444752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8444065-8444752 bp Feature: domain Description: GIIM Note: maturase Location: 8444824-8445055 bp Feature: domain Description: GIIM Note: maturase Location: 8444824-8445055 bp Feature: gene Location: 8445325-8447154 bp Feature: domain Description: Recombinase Location: 8445556-8445925 bp Feature: domain Description: Recombinase Location: 8445556-8445925 bp Feature: domain Description: Zn_ribbon_recom Location: 8445976-8446156 bp Feature: domain Description: Zn_ribbon_recom Location: 8445976-84461 56 bp Feature: domain Description: Recombinase Location: 8446684-8446816 bp Feature: domain Description: Recombinase Location: 8446684-844681 6 bp Feature: gene Location: 8447455-8448606 bp Ori: AVH60828.1 Feature: domain Description: HTH_29 Location: 8447587-8447764 bp Feature: domain Description: HTH_29 Location: 8447587-8447764 bp Feature: domain Description: DDE_3 Location: 8448028-8448430 bp Feature: domain Description: DDE_3 Location: 8448028-8448430 bp Feature: gene Location: 8518395-8518736 bp Ori: AVH60874.1 Feature: domain Description: SigE-fam_strep Location: 8518464-8518701 bp Feature: domain Description: SigE-fam_strep Location: 851 8464-851 8701 bp Feature: gene Location: 8518888-8518989 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8518903-8518990 bp Feature: domain Description: HTH_OrfB_IS605 Location: 851 8903-851 8990 bp Feature: gene Location: 8519654-8521428 bp Gene: ltrA Feature: domain Description: RVT_N Location: 8519723-8519966 bp Feature: domain Description: RVT_N Location: 851 9723-851 9966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8520017-8520662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852001 7-8520662 bp Feature: domain Description: GIIM Note: maturase Location: 8520713-8520947 bp Feature: domain Description: GIIM Note: maturase Location: 852071 3-8520947 bp Feature: domain Description: HNH Note: nucleases Location: 8521265-8521367 bp Feature: domain Description: HNH Note: nucleases Location: 8521 265-8521 367 bp Feature: gene Location: 8521488-8522516 bp Feature: domain Description: InsQ Location: 8521497-8522490 bp Feature: domain Description: InsQ Location: 8521 497-8522490 bp Feature: gene Location: 8522706-8523578 bp Ori: AVH61690.1 Feature: domain Description: COG3293 Location: 8522775-8523117 bp Feature: domain Description: COG3293 Location: 8522775-85231 1 7 bp Feature: domain Description: COG3293 Location: 8523168-8523549 bp Feature: domain Description: COG3293 Location: 85231 68-8523549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PinE (COG1961), INT_Cre_C (cd00799), PQQ_3 (pfam13570)
crotonase-like (cl23717), MFS_MucK (cd17371), gabD1 (PRK09406), HTH_29 (pfam13551), DDE_3 (pfam13358), SigE-fam_strep (TIGR02983), HTH_OrfB_IS605 (pfam12323), HNH (pfam01844), InsQ (COG0675)