myRT

myRT report for GCA_002947915.1_ASM294791v1

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Seq: CP026674.1 Pseudomonas sp. SWI44 chromosome, complete genome (5919083 bp)
Overview 1 RT 1: 1175425-1183775 bp 2 RT 2: 3389764-3393134 bp 3 RT 3: 4252304-4255195 bp 4 RT 4: 5176050-5180931 bp Neighborhood of RT #1 [1175425, 1183775] PRK07209 DUF45 RVT-UG1 HATPase_c_3 Neighborhood of RT #2 [3389764, 3393145] COG4584 RVT-GII GIIM PRK10610 Neighborhood of RT #3 [4252304, 4255417] Rhs_assc_core RVT-GII YD_repeat_2x YD_repeat_2x RHS Neighborhood of RT #4 [5176050, 5180960] AcrR RVT-GII GIIM Amidohydro_2 MhpD Feature: gene Location: 1175425-1176672 bp Ori: AVD86676.1 Feature: domain Description: PRK07209 Location: 1175428-1176670 bp Feature: domain Description: PRK07209 Location: 1 1 75428-1 1 76670 bp Feature: gene Location: 1176774-1177244 bp Feature: domain Description: DUF45 Location: 1176780-1177221 bp Feature: domain Description: DUF45 Location: 1 1 76780-1 1 77221 bp Feature: gene Location: 1177293-1181234 bp Ori: AVD86677.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1178007-1178499 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 1 78007-1 1 78499 bp Feature: gene Location: 1181585-1183528 bp Ori: AVD86678.1 Feature: domain Description: HATPase_c_3 Location: 1181657-1181999 bp Feature: domain Description: HATPase_c_3 Location: 1 1 81 657-1 1 81 999 bp Feature: gene Location: 1183539-1183775 bp Feature: gene Location: 3389764-3390060 bp Feature: domain Description: COG4584 Location: 3389767-3390061 bp Feature: domain Description: COG4584 Location: 3389767-3390061 bp Feature: gene Location: 3390053-3390190 bp Feature: gene Location: 3390598-3391866 bp Ori: AVD88560.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3390802-3391459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3390802-3391 459 bp Feature: domain Description: GIIM Note: maturase Location: 3391537-3391759 bp Feature: domain Description: GIIM Note: maturase Location: 3391 537-3391 759 bp Feature: gene Location: 3391923-3392240 bp Feature: gene Location: 3392759-3393145 bp Ori: AVD88561.1 Feature: domain Description: PRK10610 Location: 3392765-3393134 bp Feature: domain Description: PRK1 061 0 Location: 3392765-33931 34 bp Feature: gene Location: 4252304-4252941 bp Feature: domain Description: Rhs_assc_core Location: 4252352-4252595 bp Feature: domain Description: Rhs_assc_core Location: 4252352-4252595 bp Feature: gene Location: 4253297-4253542 bp Feature: gene Location: 4253858-4254043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4253864-4254017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4253864-425401 7 bp Feature: gene Location: 4254251-4254463 bp Feature: gene Location: 4254472-4255417 bp Feature: domain Description: YD_repeat_2x Location: 4254601-4254685 bp Feature: domain Description: YD_repeat_2x Location: 4254601 -4254685 bp Feature: domain Description: YD_repeat_2x Location: 4254709-4254757 bp Feature: domain Description: YD_repeat_2x Location: 4254709-4254757 bp Feature: domain Description: RHS Location: 4255087-4255195 bp Feature: domain Description: RHS Location: 4255087-42551 95 bp Feature: gene Location: 5176050-5176787 bp Ori: AVD90103.1 Feature: domain Description: AcrR Location: 5176203-5176689 bp Feature: domain Description: AcrR Location: 51 76203-51 76689 bp Feature: gene Location: 5176825-5177172 bp Feature: gene Location: 5177273-5178694 bp Ori: AVD90105.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5177630-5178245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 77630-51 78245 bp Feature: domain Description: GIIM Note: maturase Location: 5178302-5178527 bp Feature: domain Description: GIIM Note: maturase Location: 51 78302-51 78527 bp Feature: gene Location: 5179030-5180094 bp Ori: AVD90106.1 Feature: domain Description: Amidohydro_2 Location: 5179039-5180062 bp Feature: domain Description: Amidohydro_2 Location: 51 79039-51 80062 bp Feature: gene Location: 5180094-5180960 bp Ori: AVD90107.1 Feature: domain Description: MhpD Location: 5180244-5180931 bp Feature: domain Description: MhpD Location: 51 80244-51 80931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated), DUF45 (pfam01863), RVT-UG1, HATPase_c_3 (pfam13589), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), PRK10610 (chemotaxis protein CheY), Rhs_assc_core (TIGR03696), YD_repeat_2x (TIGR01643)
RHS (pfam03527), AcrR (COG1309), Amidohydro_2 (pfam04909), MhpD (COG3971)