myRT

myRT report for GCA_002948105.1_ASM294810v1

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Seq: CP026675.1 Pseudomonas sp. SWI36 chromosome, complete genome (6172256 bp)
Overview 1 RT 1: 118361-125139 bp 2 RT 2: 1668379-1679228 bp 3 RT 3: 4691910-4695941 bp Neighborhood of RT #1 [118361, 125144] GlcG RVT-GII GIIM MFS_MdfA_MDR_like PRK06199 Neighborhood of RT #2 [1668379, 1679230] RVT-GII NAT_SF LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3177 RVT-GII GIIM N_methyl Pilin PulF Neighborhood of RT #3 [4691910, 4695941] MvaT_DBD RVT-GII GIIM ArdC Feature: gene Location: 118361-118801 bp Ori: AVD91055.1 Feature: domain Description: GlcG Location: 118382-118784 bp Feature: domain Description: GlcG Location: 1 1 8382-1 1 8784 bp Feature: gene Location: 118987-120297 bp Feature: gene Location: 120369-121790 bp Ori: AVD91057.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120726-121341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20726-1 21 341 bp Feature: domain Description: GIIM Note: maturase Location: 121395-121623 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 395-1 21 623 bp Feature: gene Location: 122465-123682 bp Ori: AVD91058.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 122510-123632 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 1 2251 0-1 23632 bp Feature: gene Location: 124005-125144 bp Ori: AVD91059.1 Feature: domain Description: PRK06199 Location: 124008-125139 bp Feature: domain Description: PRK061 99 Location: 1 24008-1 251 39 bp Feature: gene Location: 1668379-1668654 bp Feature: gene Location: 1668651-1668830 bp Feature: gene Location: 1668748-1670523 bp Ori: AVD92386.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669462-1670152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 669462-1 6701 52 bp Feature: gene Location: 1670648-1671094 bp Ori: AVD92387.1 Feature: domain Description: NAT_SF Location: 1670792-1670978 bp Feature: domain Description: NAT_SF Location: 1 670792-1 670978 bp Feature: gene Location: 1671105-1672658 bp Ori: AVD92388.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1671246-1671459 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 671 246-1 671 459 bp Feature: domain Description: zf-IS66 Location: 1671480-1671606 bp Feature: domain Description: zf-IS66 Location: 1 671 480-1 671 606 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1671648-1672491 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 671 648-1 672491 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1672512-1672623 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 67251 2-1 672623 bp Feature: gene Location: 1673923-1675077 bp Ori: AVD92390.1 Feature: domain Description: COG3177 Location: 1673962-1674991 bp Feature: domain Description: COG31 77 Location: 1 673962-1 674991 bp Feature: gene Location: 1675198-1675392 bp Feature: gene Location: 1675327-1676748 bp Ori: AVD92392.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1675684-1676299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 675684-1 676299 bp Feature: domain Description: GIIM Note: maturase Location: 1676356-1676581 bp Feature: domain Description: GIIM Note: maturase Location: 1 676356-1 676581 bp Feature: gene Location: 1677395-1677805 bp Ori: AVD92393.1 Feature: domain Description: N_methyl Location: 1677398-1677476 bp Feature: domain Description: N_methyl Location: 1 677398-1 677476 bp Feature: domain Description: Pilin Location: 1677500-1677797 bp Feature: domain Description: Pilin Location: 1 677500-1 677797 bp Feature: gene Location: 1678022-1679230 bp Ori: AVD92394.1 Feature: domain Description: PulF Location: 1678043-1679228 bp Feature: domain Description: PulF Location: 1 678043-1 679228 bp Feature: gene Location: 4691910-4692104 bp Feature: gene Location: 4692229-4692594 bp Ori: AVD94957.1 Feature: domain Description: MvaT_DBD Location: 4692469-4692592 bp Feature: domain Description: MvaT_DBD Location: 4692469-4692592 bp Feature: gene Location: 4693099-4694520 bp Ori: AVD94958.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693456-4694071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693456-4694071 bp Feature: domain Description: GIIM Note: maturase Location: 4694128-4694353 bp Feature: domain Description: GIIM Note: maturase Location: 46941 28-4694353 bp Feature: gene Location: 4694602-4695540 bp Ori: AVD94959.1 Feature: domain Description: ArdC Location: 4694608-4695526 bp Feature: domain Description: ArdC Location: 4694608-4695526 bp Feature: gene Location: 4695627-4695941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlcG (COG3193), RVT-GII, GIIM (pfam08388), MFS_MdfA_MDR_like (cd17320), PRK06199 (ornithine cyclodeaminase; Validated), NAT_SF (cl17182), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
COG3177 (Fic family protein ), N_methyl (pfam07963), Pilin (pfam00114), PulF (COG1459), MvaT_DBD (cl40688), ArdC (COG4227)