myRT

myRT report for GCA_002948295.1_ASM294829v1

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Seq: CP025505.1 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvC, complete sequence (405209 bp)
Overview 1 RT 1: 23611-35212 bp Neighborhood of RT #1 [23611, 35841] MarR_2 PLDc_unchar5 PLDc_unchar5 KOG1803 KOG1803 RVT-Retrons DEXQc_UvrD DEXQc_UvrD RecB YbjD YbjD Feature: gene Location: 23611-25371 bp Ori: AVC45443.1 Feature: domain Description: MarR_2 Location: 23683-23833 bp Feature: domain Description: MarR_2 Location: 23683-23833 bp Feature: domain Description: PLDc_unchar5 Location: 24349-24748 bp Feature: domain Description: PLDc_unchar5 Location: 24349-24748 bp Feature: domain Description: PLDc_unchar5 Location: 24943-25300 bp Feature: domain Description: PLDc_unchar5 Location: 24943-25300 bp Feature: gene Location: 25368-28679 bp Ori: AVC45477.1 Feature: domain Description: KOG1803 Location: 27024-27654 bp Feature: domain Description: KOG1 803 Location: 27024-27654 bp Feature: domain Description: KOG1803 Location: 27885-28515 bp Feature: domain Description: KOG1 803 Location: 27885-2851 5 bp Feature: gene Location: 28992-30140 bp Ori: AVC45422.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29316-29853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2931 6-29853 bp Feature: gene Location: 31772-33769 bp Ori: AVC45551.1 Feature: domain Description: DEXQc_UvrD Location: 31916-32153 bp Feature: domain Description: DEXQc_UvrD Location: 31 91 6-321 53 bp Feature: domain Description: DEXQc_UvrD Location: 32372-32612 bp Feature: domain Description: DEXQc_UvrD Location: 32372-3261 2 bp Feature: domain Description: RecB Location: 33590-33707 bp Feature: domain Description: RecB Location: 33590-33707 bp Feature: gene Location: 33772-35841 bp Ori: AVC45672.1 Feature: domain Description: YbjD Location: 33775-34063 bp Feature: domain Description: YbjD Location: 33775-34063 bp Feature: domain Description: YbjD Location: 34621-35212 bp Feature: domain Description: YbjD Location: 34621 -3521 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR_2 (pfam12802), PLDc_unchar5 (cd09133), KOG1803 (KOG1803, DNA helicase ), RVT-Retrons, DEXQc_UvrD (cd17932), RecB (COG4998), YbjD (COG3593)

Seq: CP025509.1 Rhizobium leguminosarum bv. viciae strain UPM791 chromosome, complete genome (4760731 bp)
Overview 1 RT 1: 1178315-1187937 bp Neighborhood of RT #1 [1178315, 1187937] PRK09754 INT_C_like_1 RVT-UG8 RVT-UG3 PinE Feature: gene Location: 1178315-1179517 bp Ori: AVC49090.1 Feature: domain Description: PRK09754 Location: 1178318-1179485 bp Feature: domain Description: PRK09754 Location: 1178318-1179485 bp Feature: gene Location: 1179870-1181633 bp Ori: AVC49091.1 Feature: domain Description: INT_C_like_1 Location: 1180977-1181544 bp Feature: domain Description: INT_C_like_1 Location: 1180977-1181544 bp Feature: gene Location: 1181830-1183797 bp Ori: AVC49092.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1182358-1182799 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1182 358-1182 799 bp Feature: gene Location: 1183790-1185037 bp Ori: AVC49093.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1184075-1184567 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1184075-1184567 bp Feature: gene Location: 1185867-1186328 bp Ori: AVC49094.1 Feature: domain Description: PinE Location: 1185879-1186317 bp Feature: domain Description: PinE Location: 1185879-1186317 bp Feature: gene Location: 1186504-1187937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09754 (phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional), INT_C_like_1 (cd01184), RVT-UG8, RVT-UG3, PinE (COG1961)

Seq: CP025507.1 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence (1291920 bp)
Overview 1 RT 1: 434747-447693 bp Neighborhood of RT #1 [434747, 447794] YbjD YbjD PLDc_unchar6 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII RES MarR_2 PLDc_unchar5 PLDc_unchar5 Feature: gene Location: 434747-436576 bp Ori: AVC46838.1 Feature: domain Description: YbjD Location: 434750-435080 bp Feature: domain Description: YbjD Location: 43 4750-43 5080 bp Feature: domain Description: YbjD Location: 435572-435845 bp Feature: domain Description: YbjD Location: 43 5572-43 5845 bp Feature: gene Location: 436879-438078 bp Ori: AVC46291.1 Feature: domain Description: PLDc_unchar6 Location: 437527-437902 bp Feature: domain Description: PLDc_unchar6 Location: 43 7527-43 7902 bp Feature: gene Location: 438220-440043 bp Ori: AVC46842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438958-439648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 8958-43 9648 bp Feature: gene Location: 440153-441742 bp Ori: AVC46575.1 Feature: domain Description: LZ_Tnp_IS66 Location: 440270-440498 bp Feature: domain Description: LZ_Tnp_IS66 Location: 440270-440498 bp Feature: domain Description: zf-IS66 Location: 440525-440651 bp Feature: domain Description: zf-IS66 Location: 440525-440651 bp Feature: domain Description: DDE_Tnp_IS66 Location: 440714-441581 bp Feature: domain Description: DDE_Tnp_IS66 Location: 440714-441581 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 441602-441713 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 441602-441713 bp Feature: gene Location: 441795-442148 bp Ori: AVC46964.1 Feature: domain Description: TnpB_IS66 Location: 441822-442110 bp Feature: domain Description: TnpB_IS66 Location: 441822-442110 bp Feature: gene Location: 442689-444512 bp Ori: AVC47066.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443427-444117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443 427-444117 bp Feature: gene Location: 444543-445943 bp Ori: AVC47189.1 Feature: domain Description: RES Location: 445275-445707 bp Feature: domain Description: RES Location: 445275-445707 bp Feature: gene Location: 446007-447794 bp Ori: AVC47111.1 Feature: domain Description: MarR_2 Location: 446079-446226 bp Feature: domain Description: MarR_2 Location: 446079-446226 bp Feature: domain Description: PLDc_unchar5 Location: 446742-447141 bp Feature: domain Description: PLDc_unchar5 Location: 446742-447141 bp Feature: domain Description: PLDc_unchar5 Location: 447336-447693 bp Feature: domain Description: PLDc_unchar5 Location: 4473 3 6-447693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), PLDc_unchar6 (cd09176), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RES (smart00953), MarR_2 (pfam12802)
PLDc_unchar5 (cd09133)