myRT

myRT report for GCA_002949515.1_ASM294951v1

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Seq: CP026811.1 Shigella flexneri strain 64-5500 chromosome, complete genome (4659714 bp)
Overview 1 RT 1: 2495476-2503765 bp Neighborhood of RT #1 [2495476, 2503884] prfC DinI RVT-Retrons TIR_2 Caudo_TAP phage_tail_N ABC_SMC2_euk 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 2495476-2497062 bp Feature: domain Description: prfC Location: 2495494-2497060 bp Feature: domain Description: prfC Location: 2495494-2497060 bp Feature: gene Location: 2497343-2497543 bp Feature: domain Description: DinI Location: 2497352-2497523 bp Feature: domain Description: DinI Location: 2497352-2497523 bp Feature: gene Location: 2497903-2499507 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2498194-2498785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24981 94-2498785 bp Feature: domain Description: TIR_2 Location: 2499112-2499400 bp Feature: domain Description: TIR_2 Location: 24991 1 2-2499400 bp Feature: gene Location: 2499953-2500537 bp Feature: domain Description: Caudo_TAP Location: 2500169-2500526 bp Feature: domain Description: Caudo_TAP Location: 25001 69-2500526 bp Feature: gene Location: 2500537-2503884 bp Feature: domain Description: phage_tail_N Location: 2500540-2500939 bp Feature: domain Description: phage_tail_N Location: 2500540-2500939 bp Feature: domain Description: ABC_SMC2_euk Location: 2501011-2502013 bp Feature: domain Description: ABC_SMC2_euk Location: 2501 01 1 -250201 3 bp Feature: domain Description: 34 Location: 2502637-2502970 bp Feature: domain Description: 34 Location: 2502637-2502970 bp Feature: domain Description: Collar Location: 2503255-2503393 bp Feature: domain Description: Collar Location: 2503255-2503393 bp Feature: domain Description: Phage_fiber Location: 2503444-2503483 bp Feature: domain Description: Phage_fiber Location: 2503444-2503483 bp Feature: domain Description: Phage_fiber Location: 2503540-2503579 bp Feature: domain Description: Phage_fiber Location: 2503540-2503579 bp Feature: domain Description: Phage_fiber Location: 2503687-2503726 bp Feature: domain Description: Phage_fiber Location: 2503687-2503726 bp Feature: domain Description: Phage_fiber Location: 2503732-2503765 bp Feature: domain Description: Phage_fiber Location: 2503732-2503765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), DinI (pfam06183), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), ABC_SMC2_euk (cd03273), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: CP026812.1 Shigella flexneri strain 64-5500 plasmid unnamed, complete sequence (181479 bp)
Overview 1 RT 1: 35386-37852 bp Neighborhood of RT #1 [35386, 37852] COG3547 RVT-GII GIIM Acetyltransf_10 Feature: gene Location: 35386-35652 bp Feature: domain Description: COG3547 Location: 35395-35641 bp Feature: domain Description: COG3547 Location: 35395-35641 bp Feature: gene Location: 35748-35939 bp Feature: gene Location: 35940-37145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36114-36768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36114-36768 bp Feature: domain Description: GIIM Note: maturase Location: 36846-37068 bp Feature: domain Description: GIIM Note: maturase Location: 36846-37068 bp Feature: gene Location: 37152-37637 bp Feature: domain Description: Acetyltransf_10 Location: 37287-37602 bp Feature: domain Description: Acetyltransf_10 Location: 372 87-37602 bp Feature: gene Location: 37718-37852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673)