myRT

myRT report for GCA_002949575.1_ASM294957v1

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Seq: CP026768.1 Shigella flexneri Y strain 93-3063 chromosome, complete genome (4628330 bp)
Overview 1 RT 1: 2656214-2660021 bp Neighborhood of RT #1 [2656214, 2660021] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2656214-2656516 bp Feature: domain Description: InsE Location: 2656253-2656502 bp Feature: domain Description: InsE Location: 2656253-2656502 bp Feature: gene Location: 2656572-2656997 bp Feature: domain Description: PHA02517 Location: 2656596-2656932 bp Feature: domain Description: PHA0251 7 Location: 2656596-2656932 bp Feature: gene Location: 2657589-2659112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657862-2658594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657862-2658594 bp Feature: domain Description: GIIM Note: maturase Location: 2658669-2658867 bp Feature: domain Description: GIIM Note: maturase Location: 2658669-2658867 bp Feature: gene Location: 2659277-2659681 bp Feature: domain Description: PHA02517 Location: 2659280-2659661 bp Feature: domain Description: PHA0251 7 Location: 2659280-2659661 bp Feature: gene Location: 2659764-2660021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP026771.1 Shigella flexneri Y strain 93-3063 plasmid unnamed3, complete sequence (220759 bp)
Overview 1 RT 1: 76862-80189 bp 2 RT 2: 174609-177996 bp Neighborhood of RT #1 [76862, 80203] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [174609, 177998] PAP2_acid_phosphatase Tra5 RVT-GII PRK09409 PRK09413 Feature: gene Location: 76862-77509 bp Feature: domain Description: PHA02517 Location: 76865-77507 bp Feature: domain Description: PHA02 517 Location: 76865-77507 bp Feature: gene Location: 77603-77734 bp Feature: domain Description: DDE_Tnp_IS66 Location: 77615-77708 bp Feature: domain Description: DDE_Tnp_IS66 Location: 77615-77708 bp Feature: gene Location: 78212-79429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78398-79052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78398-79052 bp Feature: domain Description: GIIM Note: maturase Location: 79130-79352 bp Feature: domain Description: GIIM Note: maturase Location: 79130-79352 bp Feature: gene Location: 79545-79691 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 79557-79668 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 79557-79668 bp Feature: gene Location: 79718-80203 bp Feature: domain Description: COG3547 Location: 79736-80189 bp Feature: domain Description: COG3547 Location: 79736-80189 bp Feature: gene Location: 174609-175358 bp Feature: domain Description: PAP2_acid_phosphatase Location: 174684-175338 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 174684-175338 bp Feature: gene Location: 175754-175954 bp Feature: domain Description: Tra5 Location: 175763-175937 bp Feature: domain Description: Tra5 Location: 175763-175937 bp Feature: gene Location: 175967-176845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176267-176759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1762 67-176759 bp Feature: gene Location: 177091-177675 bp Feature: domain Description: PRK09409 Location: 177094-177673 bp Feature: domain Description: PRK09409 Location: 177094-177673 bp Feature: gene Location: 177633-177998 bp Feature: domain Description: PRK09413 Location: 177636-177996 bp Feature: domain Description: PRK09413 Location: 177636-177996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed)