myRT

myRT report for GCA_002949675.1_ASM294967v1

Download annotations/find similar RTs

Seq: CP026774.1 Shigella dysenteriae strain ATCC 13313 chromosome, complete genome (4395762 bp)
Overview 1 RT 1: 2450599-2453129 bp Neighborhood of RT #1 [2450599, 2453143] pyrE RVT-Retrons slmA Feature: gene Location: 2450599-2451255 bp Feature: domain Description: pyrE Location: 2450617-2451250 bp Feature: domain Description: pyrE Location: 245061 7-2451 250 bp Feature: gene Location: 2451388-2451666 bp Feature: gene Location: 2451709-2452218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2451715-2452210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2451 71 5-245221 0 bp Feature: gene Location: 2452304-2452501 bp Feature: gene Location: 2452547-2453143 bp Feature: domain Description: slmA Location: 2452553-2453129 bp Feature: domain Description: slmA Location: 2452553-24531 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480)

Seq: CP026775.1 Shigella dysenteriae strain ATCC 13313 plasmid unnamed, complete sequence (182697 bp)
Overview 1 RT 1: 11528-14854 bp 2 RT 2: 133083-137221 bp Neighborhood of RT #1 [11528, 14868] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [133083, 137226] PHA02517 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE PRK08943 Feature: gene Location: 11528-12187 bp Feature: domain Description: PHA02517 Location: 11531-12173 bp Feature: domain Description: PHA02 517 Location: 11531-12 173 bp Feature: gene Location: 12269-12400 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12281-12374 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12 2 81-12 374 bp Feature: gene Location: 12862-14094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13063-13717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13063-13717 bp Feature: domain Description: GIIM Note: maturase Location: 13795-14017 bp Feature: domain Description: GIIM Note: maturase Location: 13795-14017 bp Feature: gene Location: 14210-14356 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14222-14333 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 142 2 2 -14333 bp Feature: gene Location: 14383-14868 bp Feature: domain Description: COG3547 Location: 14401-14854 bp Feature: domain Description: COG3547 Location: 14401-14854 bp Feature: gene Location: 133083-133901 bp Feature: domain Description: PHA02517 Location: 133098-133890 bp Feature: domain Description: PHA02 517 Location: 133098-133890 bp Feature: gene Location: 133942-134700 bp Feature: domain Description: DDE_Tnp_1 Location: 133948-134656 bp Feature: domain Description: DDE_Tnp_1 Location: 133948-134656 bp Feature: gene Location: 134726-134929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134834-134924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134834-13492 4 bp Feature: gene Location: 134990-135298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134999-135290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134999-1352 90 bp Feature: gene Location: 135440-136093 bp Feature: domain Description: HTH_23 Location: 135533-135620 bp Feature: domain Description: HTH_2 3 Location: 135533-13562 0 bp Feature: domain Description: InsE Location: 135752-135944 bp Feature: domain Description: InsE Location: 135752 -135944 bp Feature: gene Location: 136282-137226 bp Feature: domain Description: PRK08943 Location: 136285-137221 bp Feature: domain Description: PRK08943 Location: 1362 85-1372 2 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated)