myRT

myRT report for GCA_002949715.1_ASM294971v1

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Seq: CP026777.1 Shigella dysenteriae strain 69-3818 chromosome, complete genome (4390268 bp)
Overview 1 RT 1: 1621063-1624167 bp Neighborhood of RT #1 [1621063, 1624172] dut slmA RVT-Retrons pyrE Feature: gene Location: 1621063-1621521 bp Feature: domain Description: dut Location: 1621069-1621516 bp Feature: domain Description: dut Location: 1 621 069-1 621 51 6 bp Feature: gene Location: 1621628-1622224 bp Feature: domain Description: slmA Location: 1621634-1622210 bp Feature: domain Description: slmA Location: 1 621 634-1 62221 0 bp Feature: gene Location: 1622553-1623062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1622559-1623054 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 622559-1 623054 bp Feature: gene Location: 1623105-1623383 bp Feature: gene Location: 1623516-1624172 bp Feature: domain Description: pyrE Location: 1623534-1624167 bp Feature: domain Description: pyrE Location: 1 623534-1 6241 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: CP026779.1 Shigella dysenteriae strain 69-3818 plasmid unnamed2, complete sequence (202417 bp)
Overview 1 RT 1: 110995-113648 bp 2 RT 2: 175677-177633 bp Neighborhood of RT #1 [110995, 113648] COG3547 RVT-GII GIIM Neighborhood of RT #2 [175677, 177692] InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 110995-111480 bp Feature: domain Description: COG3547 Location: 111013-111466 bp Feature: domain Description: COG3547 Location: 111013-111466 bp Feature: gene Location: 111576-111743 bp Feature: gene Location: 111769-113001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111970-112624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111970-112 62 4 bp Feature: domain Description: GIIM Note: maturase Location: 112702-112924 bp Feature: domain Description: GIIM Note: maturase Location: 112 702 -112 92 4 bp Feature: gene Location: 112996-113400 bp Feature: gene Location: 113454-113648 bp Feature: gene Location: 175677-175871 bp Feature: gene Location: 175877-176179 bp Feature: domain Description: InsE Location: 175883-176036 bp Feature: domain Description: InsE Location: 175883-176036 bp Feature: gene Location: 176321-176533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176324-176525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17632 4-17652 5 bp Feature: gene Location: 176543-176971 bp Feature: gene Location: 176985-177692 bp Feature: domain Description: DDE_Tnp_1 Location: 176991-177633 bp Feature: domain Description: DDE_Tnp_1 Location: 176991-177633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), InsE (COG2963), DDE_Tnp_1 (pfam01609)