myRT

myRT report for GCA_002949735.1_ASM294973v1

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Seq: CP026682.1 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence (213966 bp)
Overview 1 RT 1: 171635-178741 bp Neighborhood of RT #1 [171635, 178830] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Acetyltransf_7 FhaB Feature: gene Location: 171635-171910 bp Ori: AVH68247.1 Feature: domain Description: Cas2_I_II_III Location: 171644-171872 bp Feature: domain Description: Cas2_I_II_III Location: 1 71 644-1 71 872 bp Feature: gene Location: 171911-172915 bp Ori: AVH68248.1 Feature: domain Description: Cas1_I-II-III Location: 171923-172877 bp Feature: domain Description: Cas1 _I-II-III Location: 1 71 923-1 72877 bp Feature: gene Location: 173065-174018 bp Ori: AVH68249.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 173272-173878 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 73272-1 73878 bp Feature: gene Location: 175466-175933 bp Ori: AVH68250.1 Feature: domain Description: Acetyltransf_7 Location: 175592-175820 bp Feature: domain Description: Acetyltransf_7 Location: 1 75592-1 75820 bp Feature: gene Location: 176266-178830 bp Ori: AVH68251.1 Feature: domain Description: FhaB Location: 176392-178741 bp Feature: domain Description: FhaB Location: 1 76392-1 78741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, Acetyltransf_7 (pfam13508), FhaB (COG3210)

Seq: CP026681.1 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 chromosome, complete genome (8214648 bp)
Overview 1 RT 1: 108825-116795 bp 2 RT 2: 140640-151501 bp 3 RT 3: 2896095-2901218 bp 4 RT 4: 4793862-4803784 bp 5 RT 5: 5850777-5855878 bp Neighborhood of RT #1 [108825, 116869] RVT-CRISPR cas1 HTH_XRE DUF4384 TPR_12 TPR_12 TPR_10 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 CHAT Neighborhood of RT #2 [140640, 151501] DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons COP23 Neighborhood of RT #3 [2896095, 2901218] HTH_XRE RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [4793862, 4803801] FAD_oxidored FAD_oxidored FAD_oxidored pPIWI_RE_X MID_pPIWI_RE RNaseH_pPIWI_RE RVT-UG12 pPIWI_RE_Z pPIWI_RE_Y pPIWI_RE_REase Neighborhood of RT #5 [5850777, 5855979] RVT_N RVT-GII GIIM HNHc YozG Feature: gene Location: 108825-110909 bp Ori: AVH61983.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 109077-109686 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 109077-109686 bp Feature: domain Description: cas1 Location: 109902-110880 bp Feature: domain Description: cas1 Location: 109902 -110880 bp Feature: gene Location: 111558-112304 bp Ori: AVH61984.1 Feature: domain Description: HTH_XRE Location: 111606-111756 bp Feature: domain Description: HTH_XRE Location: 111606-111756 bp Feature: domain Description: DUF4384 Location: 111927-112158 bp Feature: domain Description: DUF4384 Location: 11192 7-112 158 bp Feature: gene Location: 113069-116869 bp Ori: AVH61985.1 Feature: domain Description: TPR_12 Location: 113123-113315 bp Feature: domain Description: TPR_12 Location: 11312 3-113315 bp Feature: domain Description: TPR_12 Location: 113342-113564 bp Feature: domain Description: TPR_12 Location: 113342 -113564 bp Feature: domain Description: TPR_10 Location: 113597-113717 bp Feature: domain Description: TPR_10 Location: 113597-113717 bp Feature: domain Description: TPR_12 Location: 113726-113942 bp Feature: domain Description: TPR_12 Location: 11372 6-113942 bp Feature: domain Description: TPR_10 Location: 113975-114083 bp Feature: domain Description: TPR_10 Location: 113975-114083 bp Feature: domain Description: TPR_12 Location: 114116-114320 bp Feature: domain Description: TPR_12 Location: 114116-11432 0 bp Feature: domain Description: TPR_12 Location: 114347-114572 bp Feature: domain Description: TPR_12 Location: 114347-114572 bp Feature: domain Description: TPR_12 Location: 114665-114824 bp Feature: domain Description: TPR_12 Location: 114665-11482 4 bp Feature: domain Description: CHAT Location: 115685-116795 bp Feature: domain Description: CHAT Location: 115685-116795 bp Feature: gene Location: 140640-146432 bp Ori: AVH62011.1 Feature: domain Description: DUF4011 Location: 140709-141198 bp Feature: domain Description: DUF4011 Location: 140709-141198 bp Feature: domain Description: DEXXQc_SF1 Location: 141528-141810 bp Feature: domain Description: DEXXQc_SF1 Location: 14152 8-141810 bp Feature: domain Description: DEXXQc_SF1 Location: 144720-145449 bp Feature: domain Description: DEXXQc_SF1 Location: 14472 0-145449 bp Feature: domain Description: TIGR00376 Location: 145596-145974 bp Feature: domain Description: TIGR00376 Location: 145596-145974 bp Feature: domain Description: MTES_1575 Location: 146115-146406 bp Feature: domain Description: MTES_1575 Location: 146115-146406 bp Feature: gene Location: 146501-148039 bp Ori: AVH62012.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 146534-146684 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 146534-146684 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 146933-147041 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 146933-147041 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 147353-147992 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 147353-147992 bp Feature: gene Location: 148842-149927 bp Ori: AVH62013.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 149055-149664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 149055-149664 bp Feature: gene Location: 150617-151111 bp Ori: AVH62014.1 Feature: domain Description: COP23 Location: 150722-151064 bp Feature: domain Description: COP2 3 Location: 15072 2 -151064 bp Feature: gene Location: 151244-151501 bp Feature: gene Location: 2896095-2896349 bp Ori: AVH64097.1 Feature: domain Description: HTH_XRE Location: 2896143-2896311 bp Feature: domain Description: HTH_XRE Location: 2 896143-2 896311 bp Feature: gene Location: 2896896-2897399 bp Feature: gene Location: 2898144-2900042 bp Ori: AVH64099.1 Feature: domain Description: RVT_N Location: 2898192-2898438 bp Feature: domain Description: RVT_N Location: 2 898192 -2 898438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2898483-2899179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 898483-2 899179 bp Feature: domain Description: GIIM Note: maturase Location: 2899284-2899509 bp Feature: domain Description: GIIM Note: maturase Location: 2 8992 84-2 899509 bp Feature: domain Description: HNHc Note: nucleases Location: 2899713-2899866 bp Feature: domain Description: HNHc Note: nucleases Location: 2 899713-2 899866 bp Feature: gene Location: 2900491-2900910 bp Feature: gene Location: 2901003-2901218 bp Feature: gene Location: 4793862-4795892 bp Ori: AVH65503.1 Feature: domain Description: FAD_oxidored Location: 4793997-4794393 bp Feature: domain Description: FAD_oxidored Location: 4793997-4794393 bp Feature: domain Description: FAD_oxidored Location: 4794561-4795245 bp Feature: domain Description: FAD_oxidored Location: 4794561-47952 45 bp Feature: domain Description: FAD_oxidored Location: 4795443-4795767 bp Feature: domain Description: FAD_oxidored Location: 4795443-4795767 bp Feature: gene Location: 4796106-4798871 bp Ori: AVH65504.1 Feature: domain Description: pPIWI_RE_X Location: 4796340-4797123 bp Feature: domain Description: pPIWI_RE_X Location: 4796340-479712 3 bp Feature: domain Description: MID_pPIWI_RE Location: 4797531-4797903 bp Feature: domain Description: MID_pPIWI_RE Location: 4797531-4797903 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 4797981-4798833 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 4797981-4798833 bp Feature: gene Location: 4799129-4800733 bp Ori: AVH65505.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4799495-4799927 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4799495-479992 7 bp Feature: gene Location: 4800766-4802661 bp Ori: AVH65506.1 Feature: domain Description: pPIWI_RE_Z Location: 4800844-4801342 bp Feature: domain Description: pPIWI_RE_Z Location: 4800844-4801342 bp Feature: gene Location: 4802665-4803801 bp Ori: AVH65507.1 Feature: domain Description: pPIWI_RE_Y Location: 4802716-4803142 bp Feature: domain Description: pPIWI_RE_Y Location: 4802 716-4803142 bp Feature: domain Description: pPIWI_RE_REase Location: 4803412-4803784 bp Feature: domain Description: pPIWI_RE_REase Location: 4803412 -4803784 bp Feature: gene Location: 5850777-5850989 bp Feature: gene Location: 5851055-5851477 bp Feature: gene Location: 5851928-5853826 bp Ori: AVH66332.1 Feature: domain Description: RVT_N Location: 5851976-5852222 bp Feature: domain Description: RVT_N Location: 5851976-5852 2 2 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5852267-5852963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5852 2 67-5852 963 bp Feature: domain Description: GIIM Note: maturase Location: 5853068-5853293 bp Feature: domain Description: GIIM Note: maturase Location: 5853068-58532 93 bp Feature: domain Description: HNHc Note: nucleases Location: 5853497-5853650 bp Feature: domain Description: HNHc Note: nucleases Location: 5853497-5853650 bp Feature: gene Location: 5854571-5855074 bp Feature: gene Location: 5855644-5855979 bp Ori: AVH66334.1 Feature: domain Description: YozG Location: 5855665-5855878 bp Feature: domain Description: YozG Location: 5855665-5855878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), DUF4384 (pfam14326), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative)
MTES_1575 (pfam18741), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, COP23 (pfam14218), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), FAD_oxidored (pfam12831), pPIWI_RE_X
MID_pPIWI_RE (pfam18157), RNaseH_pPIWI_RE, RVT-UG12, pPIWI_RE_Z (pfam18155), pPIWI_RE_Y (pfam18156), pPIWI_RE_REase (pfam18154), YozG (COG3655)