myRT

myRT report for GCA_002949755.1_ASM294975v1

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Seq: CP026878.1 Shigella dysenteriae strain 07-3308 chromosome, complete genome (4382687 bp)
Overview 1 RT 1: 3162089-3164619 bp Neighborhood of RT #1 [3162089, 3164633] pyrE RVT-Retrons slmA Feature: gene Location: 3162089-3162745 bp Feature: domain Description: pyrE Location: 3162107-3162740 bp Feature: domain Description: pyrE Location: 31 621 07-31 62740 bp Feature: gene Location: 3162878-3163156 bp Feature: gene Location: 3163199-3163708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3163205-3163700 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 63205-31 63700 bp Feature: gene Location: 3163794-3163991 bp Feature: gene Location: 3164037-3164633 bp Feature: domain Description: slmA Location: 3164043-3164619 bp Feature: domain Description: slmA Location: 31 64043-31 6461 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480)

Seq: CP026879.1 Shigella dysenteriae strain 07-3308 plasmid unnamed, complete sequence (69799 bp)
Overview 1 RT 1: 64144-67578 bp Neighborhood of RT #1 [64144, 67583] PHA02517 DDE_Tnp_1 RVT-GII HTH_23 InsE PRK08943 Feature: gene Location: 64144-64962 bp Feature: domain Description: PHA02517 Location: 64159-64951 bp Feature: domain Description: PHA02 517 Location: 64159-64951 bp Feature: gene Location: 64987-66135 bp Feature: domain Description: DDE_Tnp_1 Location: 65398-66076 bp Feature: domain Description: DDE_Tnp_1 Location: 65398-66076 bp Feature: gene Location: 66145-66357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66148-66349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66148-66349 bp Feature: gene Location: 66499-67152 bp Feature: domain Description: HTH_23 Location: 66592-66679 bp Feature: domain Description: HTH_2 3 Location: 66592 -66679 bp Feature: domain Description: InsE Location: 66811-67003 bp Feature: domain Description: InsE Location: 66811-67003 bp Feature: gene Location: 67341-67583 bp Feature: domain Description: PRK08943 Location: 67344-67578 bp Feature: domain Description: PRK08943 Location: 67344-67578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated)