myRT

myRT report for GCA_002949775.1_ASM294977v1

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Seq: CP026780.1 Shigella dysenteriae strain 53-3937 chromosome, complete genome (4382743 bp)
Overview 1 RT 1: 3658767-3661305 bp Neighborhood of RT #1 [3658767, 3661310] slmA RVT-Retrons pyrE Feature: gene Location: 3658767-3659363 bp Feature: domain Description: slmA Location: 3658773-3659349 bp Feature: domain Description: slmA Location: 3658773-3659349 bp Feature: gene Location: 3659568-3659717 bp Feature: gene Location: 3659871-3660200 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3659877-3660171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3659877-36601 71 bp Feature: gene Location: 3660243-3660521 bp Feature: gene Location: 3660654-3661310 bp Feature: domain Description: pyrE Location: 3660672-3661305 bp Feature: domain Description: pyrE Location: 3660672-3661 305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: CP026781.1 Shigella dysenteriae strain 53-3937 plasmid unnamed (67064 bp)
Overview 1 RT 1: 51244-55381 bp Neighborhood of RT #1 [51244, 55386] PHA02517 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE PRK08943 Feature: gene Location: 51244-52062 bp Feature: domain Description: PHA02517 Location: 51259-52051 bp Feature: domain Description: PHA02 517 Location: 512 59-52 051 bp Feature: gene Location: 52087-52860 bp Feature: domain Description: DDE_Tnp_1 Location: 52093-52801 bp Feature: domain Description: DDE_Tnp_1 Location: 52 093-52 801 bp Feature: gene Location: 52886-53089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52994-53084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 994-53084 bp Feature: gene Location: 53150-53458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53159-53450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53159-53450 bp Feature: gene Location: 53600-54253 bp Feature: domain Description: HTH_23 Location: 53693-53780 bp Feature: domain Description: HTH_2 3 Location: 53693-53780 bp Feature: domain Description: InsE Location: 53912-54104 bp Feature: domain Description: InsE Location: 53912 -54104 bp Feature: gene Location: 54442-55386 bp Feature: domain Description: PRK08943 Location: 54445-55381 bp Feature: domain Description: PRK08943 Location: 54445-55381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated)