myRT

myRT report for GCA_002949795.1_ASM294979v1

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Seq: CP026693.1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence (121770 bp)
Overview 1 RT 1: 6714-12785 bp Neighborhood of RT #1 [6714, 12785] NblA RVT_N RVT-GII McrA InsG Feature: gene Location: 6714-6911 bp Ori: AVH74285.1 Feature: domain Description: NblA Location: 6732-6879 bp Feature: domain Description: NblA Location: 6732-6879 bp Feature: gene Location: 7355-8935 bp Ori: AVH74286.1 Feature: domain Description: RVT_N Location: 7391-7631 bp Feature: domain Description: RVT_N Location: 7391 -7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7688-8351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7688-8351 bp Feature: domain Description: McrA Location: 8585-8912 bp Feature: domain Description: McrA Location: 8585-891 2 bp Feature: gene Location: 9374-10519 bp Ori: AVH74287.1 Feature: domain Description: InsG Location: 9899-10406 bp Feature: domain Description: InsG Location: 9899-1 0406 bp Feature: gene Location: 11895-12785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NblA (pfam04485), RVT_N (pfam13655), RVT-GII, McrA (COG4058), InsG (COG3385)

Seq: CP026692.1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 chromosome, complete genome (7061466 bp)
Overview 1 RT 1: 2890543-2898765 bp 2 RT 2: 3205308-3210689 bp 3 RT 3: 5158923-5164382 bp 4 RT 4: 6616545-6620758 bp Neighborhood of RT #1 [2890543, 2898950] Cas2_I_II_III Cas_Cas1 RVT-CRISPR cas1 HTH_XRE DUF4384 DDE_Tnp_1 Neighborhood of RT #2 [3205308, 3211189] Bfr FTR1 RVT_N RVT-GII McrA Crp YebA Neighborhood of RT #3 [5158923, 5164411] RsmG EcfA2 RVT_N RVT-GII McrA TPR TPR DUF3531 Neighborhood of RT #4 [6616545, 6620850] pheS Uma2 RVT-UG12 COG2442 DUF5615 Feature: gene Location: 2890543-2890821 bp Ori: AVH71134.1 Feature: domain Description: Cas2_I_II_III Location: 2890552-2890783 bp Feature: domain Description: Cas2 _I_II_III Location: 2 890552 -2 890783 bp Feature: gene Location: 2890824-2891867 bp Ori: AVH71135.1 Feature: domain Description: Cas_Cas1 Location: 2890836-2891577 bp Feature: domain Description: Cas_Cas1 Location: 2 890836-2 891577 bp Feature: gene Location: 2892953-2894959 bp Ori: AVH71136.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2893142-2893748 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 893142 -2 893748 bp Feature: domain Description: cas1 Location: 2893964-2894927 bp Feature: domain Description: cas1 Location: 2 893964-2 89492 7 bp Feature: gene Location: 2895189-2895947 bp Ori: AVH71137.1 Feature: domain Description: HTH_XRE Location: 2895231-2895393 bp Feature: domain Description: HTH_XRE Location: 2 8952 31-2 895393 bp Feature: domain Description: DUF4384 Location: 2895576-2895810 bp Feature: domain Description: DUF4384 Location: 2 895576-2 895810 bp Feature: gene Location: 2897835-2898950 bp Ori: AVH71138.1 Feature: domain Description: DDE_Tnp_1 Location: 2898120-2898765 bp Feature: domain Description: DDE_Tnp_1 Location: 2 89812 0-2 898765 bp Feature: gene Location: 3205308-3205742 bp Ori: AVH71359.1 Feature: domain Description: Bfr Location: 3205320-3205737 bp Feature: domain Description: Bfr Location: 32 0532 0-32 05737 bp Feature: gene Location: 3205835-3206803 bp Ori: AVH71360.1 Feature: domain Description: FTR1 Location: 3205838-3206738 bp Feature: domain Description: FTR1 Location: 32 05838-32 06738 bp Feature: gene Location: 3206925-3208469 bp Ori: AVH71361.1 Feature: domain Description: RVT_N Location: 3206961-3207201 bp Feature: domain Description: RVT_N Location: 32 06961-32 072 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3207258-3207885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 072 58-32 07885 bp Feature: domain Description: McrA Location: 3208128-3208458 bp Feature: domain Description: McrA Location: 32 0812 8-32 08458 bp Feature: gene Location: 3208925-3209617 bp Feature: gene Location: 3209984-3211189 bp Ori: AVH71363.1 Feature: domain Description: Crp Location: 3210107-3210419 bp Feature: domain Description: Crp Location: 32 10107-32 10419 bp Feature: domain Description: YebA Location: 3210458-3210689 bp Feature: domain Description: YebA Location: 32 10458-32 10689 bp Feature: gene Location: 5158923-5159657 bp Ori: AVH72835.1 Feature: domain Description: RsmG Location: 5158944-5159595 bp Feature: domain Description: RsmG Location: 5158944-5159595 bp Feature: gene Location: 5159731-5160405 bp Ori: AVH72836.1 Feature: domain Description: EcfA2 Location: 5159734-5160346 bp Feature: domain Description: EcfA2 Location: 5159734-5160346 bp Feature: gene Location: 5161229-5162809 bp Ori: AVH72837.1 Feature: domain Description: RVT_N Location: 5161265-5161505 bp Feature: domain Description: RVT_N Location: 51612 65-5161505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5161562-5162225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5161562 -5162 2 2 5 bp Feature: domain Description: McrA Location: 5162456-5162789 bp Feature: domain Description: McrA Location: 5162 456-5162 789 bp Feature: gene Location: 5162921-5163853 bp Ori: AVH72838.1 Feature: domain Description: TPR Location: 5163104-5163326 bp Feature: domain Description: TPR Location: 5163104-516332 6 bp Feature: domain Description: TPR Location: 5163581-5163746 bp Feature: domain Description: TPR Location: 5163581-5163746 bp Feature: gene Location: 5163959-5164411 bp Ori: AVH72839.1 Feature: domain Description: DUF3531 Location: 5163962-5164382 bp Feature: domain Description: DUF3531 Location: 5163962 -5164382 bp Feature: gene Location: 6616545-6617537 bp Ori: AVH73969.1 Feature: domain Description: pheS Location: 6616569-6617535 bp Feature: domain Description: pheS Location: 6616569-6617535 bp Feature: gene Location: 6617707-6618282 bp Ori: AVH73970.1 Feature: domain Description: Uma2 Location: 6617740-6618262 bp Feature: domain Description: Uma2 Location: 6617740-66182 62 bp Feature: gene Location: 6618497-6620050 bp Ori: AVH73971.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 6618860-6619298 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 6618860-66192 98 bp Feature: gene Location: 6620216-6620509 bp Ori: AVH73972.1 Feature: domain Description: COG2442 Location: 6620231-6620432 bp Feature: domain Description: COG2 442 Location: 662 02 31-662 0432 bp Feature: gene Location: 6620506-6620850 bp Ori: AVH73973.1 Feature: domain Description: DUF5615 Location: 6620527-6620758 bp Feature: domain Description: DUF5615 Location: 662 052 7-662 0758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, cas1 (TIGR00287), HTH_XRE (smart00530), DUF4384 (pfam14326), DDE_Tnp_1 (pfam01609), Bfr (COG2193), FTR1 (pfam03239), RVT_N (pfam13655)
RVT-GII, McrA (COG4058), Crp (pfam00325), YebA (COG1305), RsmG (COG0357), EcfA2 (COG1122), TPR (smart00028), DUF3531 (pfam12049), pheS (TIGR00468), Uma2 (pfam05685)
RVT-UG12, COG2442 (Uncharacterized conserved protein, DUF433 family ), DUF5615 (pfam18480)