myRT

myRT report for GCA_002949815.1_ASM294981v1

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Seq: CP026782.1 Shigella dysenteriae strain 08-3380 chromosome, complete genome (4464195 bp)
Overview 1 RT 1: 1626314-1629418 bp Neighborhood of RT #1 [1626314, 1629423] dut slmA RVT-Retrons pyrE Feature: gene Location: 1626314-1626772 bp Feature: domain Description: dut Location: 1626320-1626767 bp Feature: domain Description: dut Location: 1 626320-1 626767 bp Feature: gene Location: 1626879-1627475 bp Feature: domain Description: slmA Location: 1626885-1627461 bp Feature: domain Description: slmA Location: 1 626885-1 627461 bp Feature: gene Location: 1627804-1628313 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1627810-1628305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 62781 0-1 628305 bp Feature: gene Location: 1628356-1628634 bp Feature: gene Location: 1628767-1629423 bp Feature: domain Description: pyrE Location: 1628785-1629418 bp Feature: domain Description: pyrE Location: 1 628785-1 62941 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: CP026783.1 Shigella dysenteriae strain 08-3380 plasmid unnamed, complete sequence (183210 bp)
Overview 1 RT 1: 36446-40584 bp 2 RT 2: 97340-100666 bp Neighborhood of RT #1 [36446, 40589] PHA02517 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE PRK08943 Neighborhood of RT #2 [97340, 100680] PHA02517 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 36446-37264 bp Feature: domain Description: PHA02517 Location: 36461-37253 bp Feature: domain Description: PHA02 517 Location: 36461-372 53 bp Feature: gene Location: 37305-38063 bp Feature: domain Description: DDE_Tnp_1 Location: 37311-38019 bp Feature: domain Description: DDE_Tnp_1 Location: 37311-38019 bp Feature: gene Location: 38089-38292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38197-38287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38197-382 87 bp Feature: gene Location: 38353-38661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38362-38653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38362 -38653 bp Feature: gene Location: 38803-39456 bp Feature: domain Description: HTH_23 Location: 38896-38983 bp Feature: domain Description: HTH_2 3 Location: 38896-38983 bp Feature: domain Description: InsE Location: 39115-39307 bp Feature: domain Description: InsE Location: 39115-39307 bp Feature: gene Location: 39645-40589 bp Feature: domain Description: PRK08943 Location: 39648-40584 bp Feature: domain Description: PRK08943 Location: 39648-40584 bp Feature: gene Location: 97340-97999 bp Feature: domain Description: PHA02517 Location: 97343-97985 bp Feature: domain Description: PHA02 517 Location: 97343-97985 bp Feature: gene Location: 98081-98212 bp Feature: domain Description: DDE_Tnp_IS66 Location: 98093-98186 bp Feature: domain Description: DDE_Tnp_IS66 Location: 98093-98186 bp Feature: gene Location: 98674-99183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98875-99178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98875-99178 bp Feature: gene Location: 99196-99906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99208-99529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 08-9952 9 bp Feature: domain Description: GIIM Note: maturase Location: 99607-99829 bp Feature: domain Description: GIIM Note: maturase Location: 99607-9982 9 bp Feature: gene Location: 100022-100168 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 100034-100145 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 100034-100145 bp Feature: gene Location: 100195-100680 bp Feature: domain Description: COG3547 Location: 100213-100666 bp Feature: domain Description: COG3547 Location: 1002 13-100666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )