myRT

myRT report for GCA_002949855.1_ASM294985v1

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Seq: CP026784.1 Shigella dysenteriae strain 80-547 chromosome, complete genome (4391331 bp)
Overview 1 RT 1: 421859-424389 bp Neighborhood of RT #1 [421859, 424403] pyrE RVT-Retrons slmA Feature: gene Location: 421859-422515 bp Feature: domain Description: pyrE Location: 421877-422510 bp Feature: domain Description: pyrE Location: 421 877-42251 0 bp Feature: gene Location: 422648-422926 bp Feature: gene Location: 422969-423478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 422975-423470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 422975-423470 bp Feature: gene Location: 423564-423761 bp Feature: gene Location: 423807-424403 bp Feature: domain Description: slmA Location: 423813-424389 bp Feature: domain Description: slmA Location: 42381 3-424389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480)

Seq: CP026785.1 Shigella dysenteriae strain 80-547 plasmid unnamed (204250 bp)
Overview 1 RT 1: 48827-52965 bp 2 RT 2: 109718-113044 bp Neighborhood of RT #1 [48827, 52970] PHA02517 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE PRK08943 Neighborhood of RT #2 [109718, 113058] PHA02517 DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 48827-49645 bp Feature: domain Description: PHA02517 Location: 48842-49634 bp Feature: domain Description: PHA02 517 Location: 48842 -49634 bp Feature: gene Location: 49686-50444 bp Feature: domain Description: DDE_Tnp_1 Location: 49692-50400 bp Feature: domain Description: DDE_Tnp_1 Location: 49692 -50400 bp Feature: gene Location: 50470-50673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50578-50668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50578-50668 bp Feature: gene Location: 50734-51042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50743-51034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50743-51034 bp Feature: gene Location: 51184-51837 bp Feature: domain Description: HTH_23 Location: 51277-51364 bp Feature: domain Description: HTH_2 3 Location: 512 77-51364 bp Feature: domain Description: InsE Location: 51496-51688 bp Feature: domain Description: InsE Location: 51496-51688 bp Feature: gene Location: 52026-52970 bp Feature: domain Description: PRK08943 Location: 52029-52965 bp Feature: domain Description: PRK08943 Location: 52 02 9-52 965 bp Feature: gene Location: 109718-110377 bp Feature: domain Description: PHA02517 Location: 109721-110363 bp Feature: domain Description: PHA02 517 Location: 10972 1-110363 bp Feature: gene Location: 110459-110590 bp Feature: domain Description: DDE_Tnp_IS66 Location: 110471-110564 bp Feature: domain Description: DDE_Tnp_IS66 Location: 110471-110564 bp Feature: gene Location: 111052-111561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111253-111556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1112 53-111556 bp Feature: gene Location: 111574-112284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111586-111907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111586-111907 bp Feature: domain Description: GIIM Note: maturase Location: 111985-112207 bp Feature: domain Description: GIIM Note: maturase Location: 111985-112 2 07 bp Feature: gene Location: 112400-112546 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112412-112523 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 112 412 -112 52 3 bp Feature: gene Location: 112573-113058 bp Feature: domain Description: COG3547 Location: 112591-113044 bp Feature: domain Description: COG3547 Location: 112 591-113044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )