myRT

myRT report for GCA_002949935.1_ASM294993v1

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Seq: CP026826.1 Shigella dysenteriae strain CFSAN010956 plasmid unnamed (224352 bp)
Overview 1 RT 1: 43376-49092 bp 2 RT 2: 65010-68730 bp 3 RT 3: 142062-144716 bp Neighborhood of RT #1 [43376, 49115] RVT-GII GIIM GIIM DDE_Tnp_1 RVT-GII Tra5 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [65010, 69014] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII RVT-GII DDE_Tnp_1 DDE_Tnp_1 Neighborhood of RT #3 [142062, 144716] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 43376-43561 bp Feature: gene Location: 43733-43888 bp Feature: gene Location: 43914-44441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43920-44064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43920-44064 bp Feature: domain Description: GIIM Note: maturase Location: 44148-44364 bp Feature: domain Description: GIIM Note: maturase Location: 441 48-44364 bp Feature: gene Location: 44525-44770 bp Feature: domain Description: GIIM Note: maturase Location: 44531-44672 bp Feature: domain Description: GIIM Note: maturase Location: 44531 -44672 bp Feature: gene Location: 44998-45171 bp Feature: gene Location: 45212-46402 bp Feature: domain Description: DDE_Tnp_1 Location: 45506-46118 bp Feature: domain Description: DDE_Tnp_1 Location: 45506-461 1 8 bp Feature: gene Location: 46482-47171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46782-47169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46782-471 69 bp Feature: gene Location: 47184-47405 bp Feature: domain Description: Tra5 Location: 47196-47388 bp Feature: domain Description: Tra5 Location: 471 96-47388 bp Feature: gene Location: 47544-49115 bp Feature: domain Description: LZ_Tnp_IS66 Location: 47682-47907 bp Feature: domain Description: LZ_Tnp_IS66 Location: 47682-47907 bp Feature: domain Description: zf-IS66 Location: 47928-48060 bp Feature: domain Description: zf-IS66 Location: 47928-48060 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48105-48960 bp Feature: domain Description: DDE_Tnp_IS66 Location: 481 05-48960 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48981-49092 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48981 -49092 bp Feature: gene Location: 65010-66041 bp Feature: domain Description: HTH_23 Location: 65088-65229 bp Feature: domain Description: HTH_23 Location: 65088-65229 bp Feature: domain Description: HTH_33 Location: 65334-65481 bp Feature: domain Description: HTH_33 Location: 65334-65481 bp Feature: domain Description: DDE_3 Location: 65538-65958 bp Feature: domain Description: DDE_3 Location: 65538-65958 bp Feature: gene Location: 66185-66853 bp Feature: domain Description: HTH_23 Location: 66293-66380 bp Feature: domain Description: HTH_23 Location: 66293-66380 bp Feature: domain Description: InsE Location: 66509-66704 bp Feature: domain Description: InsE Location: 66509-66704 bp Feature: gene Location: 66947-67303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66956-67277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66956-67277 bp Feature: gene Location: 67364-67567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67472-67562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67472-67562 bp Feature: gene Location: 67593-68516 bp Feature: domain Description: DDE_Tnp_1 Location: 67599-68307 bp Feature: domain Description: DDE_Tnp_1 Location: 67599-68307 bp Feature: gene Location: 68577-69014 bp Feature: domain Description: DDE_Tnp_1 Location: 68619-68730 bp Feature: domain Description: DDE_Tnp_1 Location: 6861 9-68730 bp Feature: gene Location: 142062-142547 bp Feature: domain Description: COG3547 Location: 142080-142533 bp Feature: domain Description: COG3547 Location: 1 42080-1 42533 bp Feature: gene Location: 142574-142720 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 142586-142697 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 42586-1 42697 bp Feature: gene Location: 142836-144053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143022-143673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 43022-1 43673 bp Feature: domain Description: GIIM Note: maturase Location: 143754-143976 bp Feature: domain Description: GIIM Note: maturase Location: 1 43754-1 43976 bp Feature: gene Location: 144064-144483 bp Feature: gene Location: 144465-144716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), Tra5 (COG2801), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), HTH_23 (pfam13384), HTH_33 (pfam13592)
DDE_3 (pfam13358), InsE (COG2963), COG3547 (Transposase )