myRT

myRT report for GCA_002950035.1_ASM295003v1

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Seq: CP026877.1 Shigella boydii strain ATCC 35964 chromosome, complete genome (5129092 bp)
Overview 1 RT 1: 4045106-4048304 bp Neighborhood of RT #1 [4045106, 4048567] RVT-Retrons HTH_XRE Feature: gene Location: 4045106-4045252 bp Feature: gene Location: 4045337-4045483 bp Feature: gene Location: 4045520-4047226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4045670-4046267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4045670-4046267 bp Feature: gene Location: 4047540-4047863 bp Feature: gene Location: 4048103-4048567 bp Feature: domain Description: HTH_XRE Location: 4048133-4048304 bp Feature: domain Description: HTH_XRE Location: 40481 33-4048304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: CP026876.1 Shigella boydii strain ATCC 35964 plasmid unnamed, complete sequence (166502 bp)
Overview 1 RT 1: 54887-62587 bp 2 RT 2: 157811-161138 bp Neighborhood of RT #1 [54887, 62670] RVT_N RVT-GII GIIM HNHc DDE_Tnp_1 RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #2 [157811, 161152] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 54887-55072 bp Feature: gene Location: 55308-55442 bp Feature: gene Location: 55599-57188 bp Feature: domain Description: RVT_N Location: 55647-55890 bp Feature: domain Description: RVT_N Location: 55647-55890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55935-56580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55935-56580 bp Feature: domain Description: GIIM Note: maturase Location: 56634-56865 bp Feature: domain Description: GIIM Note: maturase Location: 56634-56865 bp Feature: domain Description: HNHc Note: nucleases Location: 57066-57180 bp Feature: domain Description: HNHc Note: nucleases Location: 57066-57180 bp Feature: gene Location: 57250-57474 bp Feature: gene Location: 57588-57782 bp Feature: gene Location: 58809-59030 bp Feature: gene Location: 59306-60463 bp Feature: domain Description: DDE_Tnp_1 Location: 59717-60395 bp Feature: domain Description: DDE_Tnp_1 Location: 59717-60395 bp Feature: gene Location: 60473-60733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60476-60707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60476-60707 bp Feature: gene Location: 60827-61444 bp Feature: domain Description: HTH_23 Location: 60884-60971 bp Feature: domain Description: HTH_2 3 Location: 60884-60971 bp Feature: domain Description: InsE Location: 61100-61298 bp Feature: domain Description: InsE Location: 61100-612 98 bp Feature: gene Location: 61639-62670 bp Feature: domain Description: HTH_23 Location: 61717-61858 bp Feature: domain Description: HTH_2 3 Location: 61717-61858 bp Feature: domain Description: HTH_33 Location: 61963-62110 bp Feature: domain Description: HTH_33 Location: 61963-62 110 bp Feature: domain Description: DDE_3 Location: 62167-62587 bp Feature: domain Description: DDE_3 Location: 62 167-62 587 bp Feature: gene Location: 157811-158458 bp Feature: domain Description: PHA02517 Location: 157814-158456 bp Feature: domain Description: PHA02 517 Location: 157814-158456 bp Feature: gene Location: 158552-158683 bp Feature: domain Description: DDE_Tnp_IS66 Location: 158564-158657 bp Feature: domain Description: DDE_Tnp_IS66 Location: 158564-158657 bp Feature: gene Location: 159245-160378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159347-160001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159347-160001 bp Feature: domain Description: GIIM Note: maturase Location: 160079-160301 bp Feature: domain Description: GIIM Note: maturase Location: 160079-160301 bp Feature: gene Location: 160494-160640 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 160506-160617 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 160506-160617 bp Feature: gene Location: 160667-161152 bp Feature: domain Description: COG3547 Location: 160685-161138 bp Feature: domain Description: COG3547 Location: 160685-161138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358), PHA02517 (putative transposase OrfB; Reviewed)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )