myRT

myRT report for GCA_002950115.1_ASM295011v1

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Seq: CP026839.1 Shigella dysenteriae strain ATCC 9752 chromosome, complete genome (4273636 bp)
Overview 1 RT 1: 1074440-1080337 bp Neighborhood of RT #1 [1074440, 1080357] phage_tail_N Phage_fiber_2 Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 DinI Feature: gene Location: 1074440-1077163 bp Feature: domain Description: phage_tail_N Location: 1074443-1074842 bp Feature: domain Description: phage_tail_N Location: 1 074443-1 074842 bp Feature: domain Description: Phage_fiber_2 Location: 1075826-1075946 bp Feature: domain Description: Phage_fiber_2 Location: 1 075826-1 075946 bp Feature: domain Description: Phage_fiber_2 Location: 1075958-1076078 bp Feature: domain Description: Phage_fiber_2 Location: 1 075958-1 076078 bp Feature: domain Description: Phage_fiber_2 Location: 1076090-1076207 bp Feature: domain Description: Phage_fiber_2 Location: 1 076090-1 076207 bp Feature: domain Description: Collar Location: 1076534-1076672 bp Feature: domain Description: Collar Location: 1 076534-1 076672 bp Feature: domain Description: Phage_fiber Location: 1076723-1076762 bp Feature: domain Description: Phage_fiber Location: 1 076723-1 076762 bp Feature: domain Description: Phage_fiber Location: 1076819-1076858 bp Feature: domain Description: Phage_fiber Location: 1 07681 9-1 076858 bp Feature: domain Description: Phage_fiber Location: 1076966-1077005 bp Feature: domain Description: Phage_fiber Location: 1 076966-1 077005 bp Feature: domain Description: Phage_fiber Location: 1077011-1077044 bp Feature: domain Description: Phage_fiber Location: 1 07701 1 -1 077044 bp Feature: gene Location: 1077163-1077747 bp Feature: domain Description: Caudo_TAP Location: 1077379-1077736 bp Feature: domain Description: Caudo_TAP Location: 1 077379-1 077736 bp Feature: gene Location: 1078194-1079633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1078320-1078911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 078320-1 07891 1 bp Feature: domain Description: TIR_2 Location: 1079238-1079526 bp Feature: domain Description: TIR_2 Location: 1 079238-1 079526 bp Feature: gene Location: 1079754-1079894 bp Feature: gene Location: 1080157-1080357 bp Feature: domain Description: DinI Location: 1080166-1080337 bp Feature: domain Description: DinI Location: 1 0801 66-1 080337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), DinI (pfam06183)

Seq: CP026838.1 Shigella dysenteriae strain ATCC 9752 plasmid unnamed, complete sequence (103367 bp)
Overview 1 RT 1: 52680-56006 bp Neighborhood of RT #1 [52680, 56020] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 52680-53327 bp Feature: domain Description: PHA02517 Location: 52683-53325 bp Feature: domain Description: PHA02 517 Location: 52 683-5332 5 bp Feature: gene Location: 53421-53552 bp Feature: domain Description: DDE_Tnp_IS66 Location: 53433-53526 bp Feature: domain Description: DDE_Tnp_IS66 Location: 53433-5352 6 bp Feature: gene Location: 54014-55246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54215-54869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 15-54869 bp Feature: domain Description: GIIM Note: maturase Location: 54947-55169 bp Feature: domain Description: GIIM Note: maturase Location: 54947-55169 bp Feature: gene Location: 55362-55508 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 55374-55485 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 55374-55485 bp Feature: gene Location: 55535-56020 bp Feature: domain Description: COG3547 Location: 55553-56006 bp Feature: domain Description: COG3547 Location: 55553-56006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )