myRT

myRT report for GCA_002950135.1_ASM295013v1

Download annotations/find similar RTs

Seq: CP026837.1 Shigella boydii strain ATCC 49812 plasmid unnamed, complete sequence (213410 bp)
Overview 1 RT 1: 2650-6429 bp 2 RT 2: 42615-48049 bp 3 RT 3: 141332-144659 bp 4 RT 4: 210794-213396 bp Neighborhood of RT #1 [2650, 6512] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #2 [42615, 48051] PAP2_acid_phosphatase Tra5 RVT-GII GIIM RVT-GII GIIM ushA Neighborhood of RT #3 [141332, 144673] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #4 [210794, 213407] RVT_N RVT-GII PHA02517 Feature: gene Location: 2650-2871 bp Feature: gene Location: 3147-3929 bp Feature: domain Description: DDE_Tnp_1 Location: 3153-3861 bp Feature: domain Description: DDE_Tnp_1 Location: 31 53-3861 bp Feature: gene Location: 3955-4158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4063-4153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4063-41 53 bp Feature: gene Location: 4219-4575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4228-4549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4228-4549 bp Feature: gene Location: 4669-5322 bp Feature: domain Description: HTH_23 Location: 4762-4849 bp Feature: domain Description: HTH_23 Location: 4762-4849 bp Feature: domain Description: InsE Location: 4987-5173 bp Feature: domain Description: InsE Location: 4987-51 73 bp Feature: gene Location: 5481-6512 bp Feature: domain Description: HTH_23 Location: 5559-5700 bp Feature: domain Description: HTH_23 Location: 5559-5700 bp Feature: domain Description: HTH_33 Location: 5805-5952 bp Feature: domain Description: HTH_33 Location: 5805-5952 bp Feature: domain Description: DDE_3 Location: 6009-6429 bp Feature: domain Description: DDE_3 Location: 6009-6429 bp Feature: gene Location: 42615-43364 bp Feature: domain Description: PAP2_acid_phosphatase Location: 42690-43344 bp Feature: domain Description: PAP2_acid_phosphatase Location: 42690-43344 bp Feature: gene Location: 43739-43960 bp Feature: domain Description: Tra5 Location: 43751-43943 bp Feature: domain Description: Tra5 Location: 43751 -43943 bp Feature: gene Location: 43973-44653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44273-44600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44273-44600 bp Feature: gene Location: 44668-44841 bp Feature: gene Location: 45069-45314 bp Feature: domain Description: GIIM Note: maturase Location: 45075-45216 bp Feature: domain Description: GIIM Note: maturase Location: 45075-4521 6 bp Feature: gene Location: 45398-45925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45404-45548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45404-45548 bp Feature: domain Description: GIIM Note: maturase Location: 45632-45848 bp Feature: domain Description: GIIM Note: maturase Location: 45632-45848 bp Feature: gene Location: 46278-46520 bp Feature: gene Location: 46432-48051 bp Feature: domain Description: ushA Location: 46447-48049 bp Feature: domain Description: ushA Location: 46447-48049 bp Feature: gene Location: 141332-141979 bp Feature: domain Description: PHA02517 Location: 141335-141977 bp Feature: domain Description: PHA0251 7 Location: 1 41 335-1 41 977 bp Feature: gene Location: 142073-142204 bp Feature: domain Description: DDE_Tnp_IS66 Location: 142085-142178 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 42085-1 421 78 bp Feature: gene Location: 142682-143899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142868-143522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42868-1 43522 bp Feature: domain Description: GIIM Note: maturase Location: 143600-143822 bp Feature: domain Description: GIIM Note: maturase Location: 1 43600-1 43822 bp Feature: gene Location: 144015-144179 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 144027-144138 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 44027-1 441 38 bp Feature: gene Location: 144188-144673 bp Feature: domain Description: COG3547 Location: 144206-144659 bp Feature: domain Description: COG3547 Location: 1 44206-1 44659 bp Feature: gene Location: 210794-211060 bp Feature: gene Location: 211296-211430 bp Feature: gene Location: 211587-212546 bp Feature: domain Description: RVT_N Location: 211635-211878 bp Feature: domain Description: RVT_N Location: 21 1 635-21 1 878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211923-212529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 923-21 2529 bp Feature: gene Location: 212571-213407 bp Feature: domain Description: PHA02517 Location: 212604-213396 bp Feature: domain Description: PHA0251 7 Location: 21 2604-21 3396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), GIIM (pfam08388), ushA (PRK09558)
PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT_N (pfam13655)