myRT

myRT report for GCA_002950155.1_ASM295015v1

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Seq: CP026840.1 Shigella dysenteriae strain ATCC 9753 chromosome, complete genome (4716399 bp)
Overview 1 RT 1: 2694392-2702797 bp Neighborhood of RT #1 [2694392, 2702799] phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2694392-2697739 bp Feature: domain Description: phage_tail_N Location: 2694395-2694794 bp Feature: domain Description: phage_tail_N Location: 2694395-2694794 bp Feature: domain Description: 34 Location: 2696492-2696825 bp Feature: domain Description: 34 Location: 2696492-2696825 bp Feature: domain Description: Collar Location: 2697110-2697248 bp Feature: domain Description: Collar Location: 26971 1 0-2697248 bp Feature: domain Description: Phage_fiber Location: 2697299-2697338 bp Feature: domain Description: Phage_fiber Location: 2697299-2697338 bp Feature: domain Description: Phage_fiber Location: 2697395-2697434 bp Feature: domain Description: Phage_fiber Location: 2697395-2697434 bp Feature: domain Description: Phage_fiber Location: 2697542-2697581 bp Feature: domain Description: Phage_fiber Location: 2697542-2697581 bp Feature: domain Description: Phage_fiber Location: 2697587-2697620 bp Feature: domain Description: Phage_fiber Location: 2697587-2697620 bp Feature: gene Location: 2697739-2698323 bp Feature: domain Description: Caudo_TAP Location: 2697955-2698312 bp Feature: domain Description: Caudo_TAP Location: 2697955-269831 2 bp Feature: gene Location: 2698769-2700373 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2699060-2699651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2699060-2699651 bp Feature: domain Description: TIR_2 Location: 2699978-2700266 bp Feature: domain Description: TIR_2 Location: 2699978-2700266 bp Feature: gene Location: 2700733-2700993 bp Feature: domain Description: PRK10597 Location: 2700736-2700976 bp Feature: domain Description: PRK1 0597 Location: 2700736-2700976 bp Feature: gene Location: 2701213-2702799 bp Feature: domain Description: prfC Location: 2701231-2702797 bp Feature: domain Description: prfC Location: 2701 231 -2702797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: CP026841.1 Shigella dysenteriae strain ATCC 9753 plasmid unnamed, complete sequence (215925 bp)
Overview 1 RT 1: 94984-98311 bp 2 RT 2: 188103-190850 bp Neighborhood of RT #1 [94984, 98325] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [188103, 190852] DDE_Tnp_IS1 Tra5 RVT-GII InsE PHA02517 Feature: gene Location: 94984-95643 bp Feature: domain Description: PHA02517 Location: 94987-95629 bp Feature: domain Description: PHA02 517 Location: 94987-9562 9 bp Feature: gene Location: 95725-95856 bp Feature: domain Description: DDE_Tnp_IS66 Location: 95737-95830 bp Feature: domain Description: DDE_Tnp_IS66 Location: 95737-95830 bp Feature: gene Location: 96334-97551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96520-97174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9652 0-97174 bp Feature: domain Description: GIIM Note: maturase Location: 97252-97474 bp Feature: domain Description: GIIM Note: maturase Location: 972 52 -97474 bp Feature: gene Location: 97667-97813 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 97679-97790 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 97679-97790 bp Feature: gene Location: 97840-98325 bp Feature: domain Description: COG3547 Location: 97858-98311 bp Feature: domain Description: COG3547 Location: 97858-98311 bp Feature: gene Location: 188103-188606 bp Feature: domain Description: DDE_Tnp_IS1 Location: 188214-188604 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1882 14-188604 bp Feature: gene Location: 188732-188953 bp Feature: domain Description: Tra5 Location: 188744-188936 bp Feature: domain Description: Tra5 Location: 188744-188936 bp Feature: gene Location: 188966-189613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189266-189584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892 66-189584 bp Feature: gene Location: 189639-189965 bp Feature: domain Description: InsE Location: 189642-189963 bp Feature: domain Description: InsE Location: 189642 -189963 bp Feature: gene Location: 189965-190852 bp Feature: domain Description: PHA02517 Location: 190025-190850 bp Feature: domain Description: PHA02 517 Location: 19002 5-190850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS1 (pfam03400), Tra5 (COG2801), InsE (COG2963)