myRT

myRT report for GCA_002950255.1_ASM295025v1

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Seq: CP026793.1 Shigella flexneri strain 74-1170 chromosome, complete genome (4733503 bp)
Overview 1 RT 1: 148308-151804 bp 2 RT 2: 974789-982164 bp 3 RT 3: 2343523-2346437 bp 4 RT 4: 2824769-2828287 bp 5 RT 5: 3318261-3322124 bp 6 RT 6: 3326831-3329746 bp 7 RT 7: 3712092-3715007 bp 8 RT 8: 3717743-3721690 bp 9 RT 9: 4040299-4044304 bp 10 RT 10: 4723695-4726762 bp Neighborhood of RT #1 [148308, 151804] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [974789, 982229] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [2343523, 2346502] RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2824769, 2828289] PHA02517 RVT-GII GIIM PHA02517 PRK11505 Neighborhood of RT #5 [3318261, 3322150] InsE PHA02517 RVT-GII GIIM PHA02517 DUF1133 Neighborhood of RT #6 [3326831, 3329811] RVT-GII GIIM PHA02517 Neighborhood of RT #7 [3712092, 3715072] RVT-GII GIIM PHA02517 Neighborhood of RT #8 [3717743, 3721690] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #9 [4040299, 4044708] InsE PHA02517 RVT-GII GIIM PHA02517 AAA_24 Neighborhood of RT #10 [4723695, 4726827] TnpB_IS66 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 148308-148436 bp Feature: gene Location: 148522-148761 bp Feature: domain Description: PHA02517 Location: 148525-148696 bp Feature: domain Description: PHA0251 7 Location: 1 48525-1 48696 bp Feature: gene Location: 149353-150876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149626-150358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 49626-1 50358 bp Feature: domain Description: GIIM Note: maturase Location: 150433-150631 bp Feature: domain Description: GIIM Note: maturase Location: 1 50433-1 50631 bp Feature: gene Location: 151053-151439 bp Feature: domain Description: PHA02517 Location: 151056-151437 bp Feature: domain Description: PHA0251 7 Location: 1 51 056-1 51 437 bp Feature: gene Location: 151490-151804 bp Feature: gene Location: 974789-978907 bp Feature: domain Description: ESPR Location: 974792-974861 bp Feature: domain Description: ESPR Location: 974792-974861 bp Feature: domain Description: Peptidase_S6 Location: 974942-977114 bp Feature: domain Description: Peptidase_S6 Location: 974942-9771 1 4 bp Feature: domain Description: autotrans_barl Location: 977678-978905 bp Feature: domain Description: autotrans_barl Location: 977678-978905 bp Feature: gene Location: 979072-979458 bp Feature: domain Description: PHA02517 Location: 979075-979456 bp Feature: domain Description: PHA0251 7 Location: 979075-979456 bp Feature: gene Location: 979635-981158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979908-980640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979908-980640 bp Feature: domain Description: GIIM Note: maturase Location: 980715-980913 bp Feature: domain Description: GIIM Note: maturase Location: 98071 5-98091 3 bp Feature: gene Location: 981112-981537 bp Feature: gene Location: 981750-982229 bp Feature: domain Description: PHA02517 Location: 981810-982164 bp Feature: domain Description: PHA0251 7 Location: 981 81 0-9821 64 bp Feature: gene Location: 2343523-2343666 bp Feature: gene Location: 2343691-2343894 bp Feature: gene Location: 2343962-2345485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344235-2344967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2344235-2344967 bp Feature: domain Description: GIIM Note: maturase Location: 2345042-2345240 bp Feature: domain Description: GIIM Note: maturase Location: 2345042-2345240 bp Feature: gene Location: 2345439-2345864 bp Feature: gene Location: 2346077-2346502 bp Feature: domain Description: PHA02517 Location: 2346101-2346437 bp Feature: domain Description: PHA0251 7 Location: 23461 01 -2346437 bp Feature: gene Location: 2824769-2824897 bp Feature: gene Location: 2824998-2825222 bp Feature: domain Description: PHA02517 Location: 2825004-2825157 bp Feature: domain Description: PHA0251 7 Location: 2825004-28251 57 bp Feature: gene Location: 2825814-2827337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826087-2826819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826087-282681 9 bp Feature: domain Description: GIIM Note: maturase Location: 2826894-2827092 bp Feature: domain Description: GIIM Note: maturase Location: 2826894-2827092 bp Feature: gene Location: 2827514-2827900 bp Feature: domain Description: PHA02517 Location: 2827517-2827898 bp Feature: domain Description: PHA0251 7 Location: 282751 7-2827898 bp Feature: gene Location: 2827951-2828289 bp Feature: domain Description: PRK11505 Location: 2827972-2828287 bp Feature: domain Description: PRK1 1 505 Location: 2827972-2828287 bp Feature: gene Location: 3318261-3318563 bp Feature: domain Description: InsE Location: 3318270-3318552 bp Feature: domain Description: InsE Location: 331 8270-331 8552 bp Feature: gene Location: 3318590-3319015 bp Feature: domain Description: PHA02517 Location: 3318614-3318950 bp Feature: domain Description: PHA0251 7 Location: 331 861 4-331 8950 bp Feature: gene Location: 3319607-3321130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3319880-3320612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 9880-332061 2 bp Feature: domain Description: GIIM Note: maturase Location: 3320687-3320885 bp Feature: domain Description: GIIM Note: maturase Location: 3320687-3320885 bp Feature: gene Location: 3321295-3321699 bp Feature: domain Description: PHA02517 Location: 3321298-3321688 bp Feature: domain Description: PHA0251 7 Location: 3321 298-3321 688 bp Feature: gene Location: 3321728-3322150 bp Feature: domain Description: DUF1133 Location: 3321731-3322124 bp Feature: domain Description: DUF1 1 33 Location: 3321 731 -33221 24 bp Feature: gene Location: 3326831-3326974 bp Feature: gene Location: 3326999-3327184 bp Feature: gene Location: 3327271-3328794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327544-3328276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327544-3328276 bp Feature: domain Description: GIIM Note: maturase Location: 3328351-3328549 bp Feature: domain Description: GIIM Note: maturase Location: 3328351 -3328549 bp Feature: gene Location: 3328748-3329173 bp Feature: gene Location: 3329386-3329811 bp Feature: domain Description: PHA02517 Location: 3329410-3329746 bp Feature: domain Description: PHA0251 7 Location: 332941 0-3329746 bp Feature: gene Location: 3712092-3712235 bp Feature: gene Location: 3712260-3712445 bp Feature: gene Location: 3712532-3714055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3712805-3713537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 2805-371 3537 bp Feature: domain Description: GIIM Note: maturase Location: 3713612-3713810 bp Feature: domain Description: GIIM Note: maturase Location: 371 361 2-371 381 0 bp Feature: gene Location: 3714009-3714434 bp Feature: gene Location: 3714647-3715072 bp Feature: domain Description: PHA02517 Location: 3714671-3715007 bp Feature: domain Description: PHA0251 7 Location: 371 4671 -371 5007 bp Feature: gene Location: 3717743-3718045 bp Feature: domain Description: InsE Location: 3717752-3718034 bp Feature: domain Description: InsE Location: 371 7752-371 8034 bp Feature: gene Location: 3718072-3718497 bp Feature: domain Description: PHA02517 Location: 3718096-3718432 bp Feature: domain Description: PHA0251 7 Location: 371 8096-371 8432 bp Feature: gene Location: 3719089-3720612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3719362-3720094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 9362-3720094 bp Feature: domain Description: GIIM Note: maturase Location: 3720169-3720367 bp Feature: domain Description: GIIM Note: maturase Location: 37201 69-3720367 bp Feature: gene Location: 3720777-3721181 bp Feature: domain Description: PHA02517 Location: 3720780-3721170 bp Feature: domain Description: PHA0251 7 Location: 3720780-3721 1 70 bp Feature: gene Location: 3721187-3721690 bp Feature: gene Location: 4040299-4040601 bp Feature: domain Description: InsE Location: 4040308-4040590 bp Feature: domain Description: InsE Location: 4040308-4040590 bp Feature: gene Location: 4040628-4041053 bp Feature: domain Description: PHA02517 Location: 4040652-4040988 bp Feature: domain Description: PHA0251 7 Location: 4040652-4040988 bp Feature: gene Location: 4041645-4043168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041918-4042650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041 91 8-4042650 bp Feature: domain Description: GIIM Note: maturase Location: 4042725-4042923 bp Feature: domain Description: GIIM Note: maturase Location: 4042725-4042923 bp Feature: gene Location: 4043333-4043737 bp Feature: domain Description: PHA02517 Location: 4043336-4043726 bp Feature: domain Description: PHA0251 7 Location: 4043336-4043726 bp Feature: gene Location: 4043743-4044708 bp Feature: domain Description: AAA_24 Location: 4043785-4044304 bp Feature: domain Description: AAA_24 Location: 4043785-4044304 bp Feature: gene Location: 4723695-4723907 bp Feature: domain Description: TnpB_IS66 Location: 4723722-4723869 bp Feature: domain Description: TnpB_IS66 Location: 4723722-4723869 bp Feature: gene Location: 4723910-4724356 bp Feature: domain Description: PHA02517 Location: 4723913-4724354 bp Feature: domain Description: PHA0251 7 Location: 472391 3-4724354 bp Feature: gene Location: 4724473-4725996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4724746-4725478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4724746-4725478 bp Feature: domain Description: GIIM Note: maturase Location: 4725553-4725751 bp Feature: domain Description: GIIM Note: maturase Location: 4725553-4725751 bp Feature: gene Location: 4725950-4726375 bp Feature: gene Location: 4726588-4726827 bp Feature: domain Description: PHA02517 Location: 4726591-4726762 bp Feature: domain Description: PHA0251 7 Location: 4726591 -4726762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PRK11505 (phosphate starvation-inducible protein PsiF), InsE (COG2963), DUF1133 (pfam06576), AAA_24 (pfam13479)
TnpB_IS66 (pfam05717)

Seq: CP026794.1 Shigella flexneri strain 74-1170 plasmid unnamed (251323 bp)
Overview 1 RT 1: 85852-89182 bp 2 RT 2: 101773-104474 bp 3 RT 3: 198795-204340 bp Neighborhood of RT #1 [85852, 89217] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_ISL3 Neighborhood of RT #2 [101773, 104494] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Neighborhood of RT #3 [198795, 204405] COG3547 RVT-GII GIIM PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 85852-85980 bp Feature: gene Location: 86066-86305 bp Feature: domain Description: PHA02517 Location: 86069-86240 bp Feature: domain Description: PHA02 517 Location: 86069-862 40 bp Feature: gene Location: 86897-88420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87170-87902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87170-87902 bp Feature: domain Description: GIIM Note: maturase Location: 87977-88175 bp Feature: domain Description: GIIM Note: maturase Location: 87977-88175 bp Feature: gene Location: 88535-88984 bp Feature: domain Description: PHA02517 Location: 88712-88982 bp Feature: domain Description: PHA02 517 Location: 88712 -88982 bp Feature: gene Location: 88987-89217 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 89041-89182 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 89041-89182 bp Feature: gene Location: 101773-101928 bp Feature: gene Location: 101954-102325 bp Feature: domain Description: GIIM Note: maturase Location: 102032-102251 bp Feature: domain Description: GIIM Note: maturase Location: 102 032 -102 2 51 bp Feature: gene Location: 102333-103136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102633-103128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 633-10312 8 bp Feature: gene Location: 103149-103349 bp Feature: domain Description: Tra5 Location: 103158-103332 bp Feature: domain Description: Tra5 Location: 103158-103332 bp Feature: gene Location: 103745-104494 bp Feature: domain Description: PAP2_acid_phosphatase Location: 103820-104474 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 10382 0-104474 bp Feature: gene Location: 198795-199280 bp Feature: domain Description: COG3547 Location: 198813-199266 bp Feature: domain Description: COG3547 Location: 198813-1992 66 bp Feature: gene Location: 199376-199543 bp Feature: gene Location: 199569-200786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199755-200409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199755-2 00409 bp Feature: domain Description: GIIM Note: maturase Location: 200487-200709 bp Feature: domain Description: GIIM Note: maturase Location: 2 00487-2 00709 bp Feature: gene Location: 200797-201180 bp Feature: gene Location: 201254-201448 bp Feature: gene Location: 201488-201934 bp Feature: domain Description: PHA02517 Location: 201491-201932 bp Feature: domain Description: PHA02 517 Location: 2 01491-2 01932 bp Feature: gene Location: 202051-203574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202324-203056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 32 4-2 03056 bp Feature: domain Description: GIIM Note: maturase Location: 203131-203329 bp Feature: domain Description: GIIM Note: maturase Location: 2 03131-2 0332 9 bp Feature: gene Location: 203528-203953 bp Feature: gene Location: 204166-204405 bp Feature: domain Description: PHA02517 Location: 204169-204340 bp Feature: domain Description: PHA02 517 Location: 2 04169-2 04340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397), COG3547 (Transposase )