myRT

myRT report for GCA_002950375.1_ASM295037v1

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Seq: CP026845.1 Shigella boydii strain NCTC 9733 chromosome, complete genome (4932934 bp)
Overview 1 RT 1: 2144281-2147745 bp Neighborhood of RT #1 [2144281, 2148005] PRK10597 RVT-Retrons TIR_2 Caudo_TAP YmdB Feature: gene Location: 2144281-2144541 bp Feature: domain Description: PRK10597 Location: 2144284-2144524 bp Feature: domain Description: PRK1 0597 Location: 21 44284-21 44524 bp Feature: gene Location: 2144903-2145052 bp Feature: gene Location: 2145067-2146506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2145193-2145784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 451 93-21 45784 bp Feature: domain Description: TIR_2 Location: 2146111-2146399 bp Feature: domain Description: TIR_2 Location: 21 461 1 1 -21 46399 bp Feature: gene Location: 2146951-2147535 bp Feature: domain Description: Caudo_TAP Location: 2147167-2147524 bp Feature: domain Description: Caudo_TAP Location: 21 471 67-21 47524 bp Feature: gene Location: 2147544-2148005 bp Feature: domain Description: YmdB Location: 2147550-2147745 bp Feature: domain Description: YmdB Location: 21 47550-21 47745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), YmdB (pfam13277)

Seq: CP026844.1 Shigella boydii strain NCTC 9733 plasmid unnamed, complete sequence (230094 bp)
Overview 1 RT 1: 71177-74940 bp 2 RT 2: 114497-116675 bp 3 RT 3: 177313-179965 bp Neighborhood of RT #1 [71177, 74960] RVT-GII GIIM RVT-GII Tra5 PAP2_acid_phosphatase Neighborhood of RT #2 [114497, 116675] HNH RVT-GII GIIM RVT_N Neighborhood of RT #3 [177313, 179965] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 71177-71419 bp Feature: gene Location: 71591-71746 bp Feature: gene Location: 71772-72299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71778-71922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71778-7192 2 bp Feature: domain Description: GIIM Note: maturase Location: 72006-72222 bp Feature: domain Description: GIIM Note: maturase Location: 72 006-72 2 2 2 bp Feature: gene Location: 72302-72580 bp Feature: gene Location: 72901-73602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73081-73474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73081-73474 bp Feature: gene Location: 73615-73836 bp Feature: domain Description: Tra5 Location: 73627-73819 bp Feature: domain Description: Tra5 Location: 7362 7-73819 bp Feature: gene Location: 74211-74960 bp Feature: domain Description: PAP2_acid_phosphatase Location: 74286-74940 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 742 86-74940 bp Feature: gene Location: 114497-114682 bp Feature: gene Location: 114723-114959 bp Feature: domain Description: HNH Note: nucleases Location: 114861-114924 bp Feature: domain Description: HNH Note: nucleases Location: 114861-11492 4 bp Feature: gene Location: 114961-116007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114964-115564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114964-115564 bp Feature: domain Description: GIIM Note: maturase Location: 115618-115849 bp Feature: domain Description: GIIM Note: maturase Location: 115618-115849 bp Feature: gene Location: 116004-116384 bp Feature: domain Description: RVT_N Location: 116052-116295 bp Feature: domain Description: RVT_N Location: 116052 -1162 95 bp Feature: gene Location: 116541-116675 bp Feature: gene Location: 177313-177798 bp Feature: domain Description: COG3547 Location: 177331-177784 bp Feature: domain Description: COG3547 Location: 177331-177784 bp Feature: gene Location: 177894-178061 bp Feature: gene Location: 178087-178614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178093-178237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178093-1782 37 bp Feature: domain Description: GIIM Note: maturase Location: 178315-178537 bp Feature: domain Description: GIIM Note: maturase Location: 178315-178537 bp Feature: gene Location: 178629-179318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178830-179292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178830-1792 92 bp Feature: gene Location: 179313-179732 bp Feature: gene Location: 179771-179965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397), HNH (pfam01844), RVT_N (pfam13655), COG3547 (Transposase )