myRT

myRT report for GCA_002950775.1_ASM295077v1

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Seq: CP009120.1 Staphylococcus pseudintermedius strain 5912, complete genome (2531995 bp)
Overview 1 RT 1: 34307-43475 bp 2 RT 2: 339139-346729 bp 3 RT 3: 485696-493280 bp 4 RT 4: 656453-664438 bp 5 RT 5: 727492-733642 bp 6 RT 6: 996675-1002370 bp 7 RT 7: 1453652-1460807 bp 8 RT 8: 1476811-1481248 bp 9 RT 9: 1487279-1492432 bp 10 RT 10: 1717448-1724899 bp 11 RT 11: 1855231-1857612 bp 12 RT 12: 1930827-1936603 bp Neighborhood of RT #1 [34307, 43475] met_A_Alw26 Eco57I TaqI_C COG3464 RVT-UG2 YeiB Neighborhood of RT #2 [339139, 346731] UDP_AE_SDR_e Glyphos_transf GT4_GT28_WabH-like RVT-GII GIIM COG3333 TctB Neighborhood of RT #3 [485696, 493396] CitB NarK RVT-GII GIIM M20_ArgE_RocB DUF3139 Neighborhood of RT #4 [656453, 664461] rpsI COG2865 RVT-GII GIIM nicotinamidase_related GlpR Neighborhood of RT #5 [727492, 733668] EVE EVE RVT-GII GIIM antiport_nhaC YuxK Neighborhood of RT #6 [996675, 1002378] CcmA EcsB RVT-GII GIIM HmoA hemE Neighborhood of RT #7 [1453652, 1460824] ABC_sbcCD SbcD RVT-GII GIIM CcdC PRK01844 Neighborhood of RT #8 [1476811, 1481248] Staph_reg_Sar RVT-GII GIIM SNase Neighborhood of RT #9 [1487279, 1492506] DUF1381 INT_ICEBs1_C_like RVT-GII GIIM GlnA HTH_GlnR-like Neighborhood of RT #10 [1717448, 1724904] PycA COG3860 RVT-GII GIIM FtsW YlaN Neighborhood of RT #11 [1855231, 1857612] RVT-GII GIIM Neighborhood of RT #12 [1930827, 1936611] HAD_Pase PRK13512 RVT-GII GIIM PRK13673 MhpD Feature: gene Location: 34307-37921 bp Ori: ASQ49464.1 Feature: domain Description: met_A_Alw26 Location: 35891-36008 bp Feature: domain Description: met_A_Alw26 Location: 35891 -36008 bp Feature: domain Description: Eco57I Location: 36740-37061 bp Feature: domain Description: Eco57I Location: 36740-37061 bp Feature: domain Description: TaqI_C Location: 37379-37733 bp Feature: domain Description: TaqI_C Location: 37379-37733 bp Feature: gene Location: 38172-39491 bp Ori: ASQ49465.1 Feature: domain Description: COG3464 Location: 38175-39429 bp Feature: domain Description: COG3464 Location: 381 75-39429 bp Feature: gene Location: 40007-41323 bp Ori: ASQ49466.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 40187-41003 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 401 87-41 003 bp Feature: gene Location: 41950-43125 bp Ori: ASQ49467.1 Feature: domain Description: YeiB Location: 41956-43111 bp Feature: domain Description: YeiB Location: 41 956-431 1 1 bp Feature: gene Location: 43290-43475 bp Feature: gene Location: 339139-340074 bp Ori: ASQ49689.1 Feature: domain Description: UDP_AE_SDR_e Location: 339145-340057 bp Feature: domain Description: UDP_AE_SDR_e Location: 3391 45-340057 bp Feature: gene Location: 340330-342849 bp Ori: ASQ49690.1 Feature: domain Description: Glyphos_transf Location: 340465-341563 bp Feature: domain Description: Glyphos_transf Location: 340465-341 563 bp Feature: domain Description: GT4_GT28_WabH-like Location: 341617-342835 bp Feature: domain Description: GT4_GT28_WabH-like Location: 341 61 7-342835 bp Feature: gene Location: 343405-344691 bp Ori: ASQ49691.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343621-344233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343621 -344233 bp Feature: domain Description: GIIM Note: maturase Location: 344296-344527 bp Feature: domain Description: GIIM Note: maturase Location: 344296-344527 bp Feature: gene Location: 344776-346275 bp Ori: ASQ49692.1 Feature: domain Description: COG3333 Location: 344794-346264 bp Feature: domain Description: COG3333 Location: 344794-346264 bp Feature: gene Location: 346288-346731 bp Ori: ASQ49693.1 Feature: domain Description: TctB Location: 346306-346729 bp Feature: domain Description: TctB Location: 346306-346729 bp Feature: gene Location: 485696-486346 bp Ori: ASQ49805.1 Feature: domain Description: CitB Location: 485699-486338 bp Feature: domain Description: CitB Location: 485699-486338 bp Feature: gene Location: 488098-489276 bp Ori: ASQ49806.1 Feature: domain Description: NarK Location: 488113-489256 bp Feature: domain Description: NarK Location: 4881 1 3-489256 bp Feature: gene Location: 489864-491150 bp Ori: ASQ49807.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490080-490692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490080-490692 bp Feature: domain Description: GIIM Note: maturase Location: 490755-490986 bp Feature: domain Description: GIIM Note: maturase Location: 490755-490986 bp Feature: gene Location: 491258-492856 bp Ori: ASQ49808.1 Feature: domain Description: M20_ArgE_RocB Location: 491294-492845 bp Feature: domain Description: M20_ArgE_RocB Location: 491 294-492845 bp Feature: gene Location: 493040-493396 bp Ori: ASQ49809.1 Feature: domain Description: DUF3139 Location: 493049-493280 bp Feature: domain Description: DUF31 39 Location: 493049-493280 bp Feature: gene Location: 656453-656851 bp Ori: ASQ49981.1 Feature: domain Description: rpsI Location: 656468-656849 bp Feature: domain Description: rpsI Location: 656468-656849 bp Feature: gene Location: 657275-658711 bp Ori: ASQ49982.1 Feature: domain Description: COG2865 Location: 657296-658676 bp Feature: domain Description: COG2865 Location: 657296-658676 bp Feature: gene Location: 659952-661238 bp Ori: ASQ49983.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660168-660780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6601 68-660780 bp Feature: domain Description: GIIM Note: maturase Location: 660843-661074 bp Feature: domain Description: GIIM Note: maturase Location: 660843-661 074 bp Feature: gene Location: 661545-662090 bp Ori: ASQ49984.1 Feature: domain Description: nicotinamidase_related Location: 661563-662025 bp Feature: domain Description: nicotinamidase_related Location: 661 563-662025 bp Feature: gene Location: 663709-664461 bp Ori: ASQ49985.1 Feature: domain Description: GlpR Location: 663718-664438 bp Feature: domain Description: GlpR Location: 66371 8-664438 bp Feature: gene Location: 727492-727728 bp Feature: gene Location: 727805-729169 bp Ori: ASQ50034.1 Feature: domain Description: EVE Location: 727940-728066 bp Feature: domain Description: EVE Location: 727940-728066 bp Feature: domain Description: EVE Location: 728243-728615 bp Feature: domain Description: EVE Location: 728243-72861 5 bp Feature: gene Location: 729727-731013 bp Ori: ASQ50035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729943-730555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729943-730555 bp Feature: domain Description: GIIM Note: maturase Location: 730618-730849 bp Feature: domain Description: GIIM Note: maturase Location: 73061 8-730849 bp Feature: gene Location: 731769-733199 bp Ori: ASQ50036.1 Feature: domain Description: antiport_nhaC Location: 731808-733149 bp Feature: domain Description: antiport_nhaC Location: 731 808-7331 49 bp Feature: gene Location: 733264-733668 bp Ori: ASQ50037.1 Feature: domain Description: YuxK Location: 733270-733642 bp Feature: domain Description: YuxK Location: 733270-733642 bp Feature: gene Location: 996675-997412 bp Ori: ASQ50273.1 Feature: domain Description: CcmA Location: 996681-997353 bp Feature: domain Description: CcmA Location: 996681 -997353 bp Feature: gene Location: 997409-998623 bp Ori: ASQ50274.1 Feature: domain Description: EcsB Location: 997427-998558 bp Feature: domain Description: EcsB Location: 997427-998558 bp Feature: gene Location: 999167-1000453 bp Ori: ASQ50275.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 999383-999995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 999383-999995 bp Feature: domain Description: GIIM Note: maturase Location: 1000058-1000289 bp Feature: domain Description: GIIM Note: maturase Location: 1 000058-1 000289 bp Feature: gene Location: 1000521-1001033 bp Ori: ASQ50276.1 Feature: domain Description: HmoA Location: 1000737-1000956 bp Feature: domain Description: HmoA Location: 1 000737-1 000956 bp Feature: gene Location: 1001344-1002378 bp Ori: ASQ50277.1 Feature: domain Description: hemE Location: 1001356-1002370 bp Feature: domain Description: hemE Location: 1 001 356-1 002370 bp Feature: gene Location: 1453652-1456684 bp Ori: ASQ50702.1 Feature: domain Description: ABC_sbcCD Location: 1453655-1456658 bp Feature: domain Description: ABC_sbcCD Location: 1 453655-1 456658 bp Feature: gene Location: 1456687-1457808 bp Ori: ASQ50703.1 Feature: domain Description: SbcD Location: 1456693-1457797 bp Feature: domain Description: SbcD Location: 1 456693-1 457797 bp Feature: gene Location: 1457994-1459280 bp Ori: ASQ50704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458210-1458822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45821 0-1 458822 bp Feature: domain Description: GIIM Note: maturase Location: 1458885-1459116 bp Feature: domain Description: GIIM Note: maturase Location: 1 458885-1 4591 1 6 bp Feature: gene Location: 1459837-1460304 bp Ori: ASQ50705.1 Feature: domain Description: CcdC Location: 1459843-1460296 bp Feature: domain Description: CcdC Location: 1 459843-1 460296 bp Feature: gene Location: 1460552-1460824 bp Ori: ASQ50706.1 Feature: domain Description: PRK01844 Location: 1460600-1460807 bp Feature: domain Description: PRK01 844 Location: 1 460600-1 460807 bp Feature: gene Location: 1476811-1477173 bp Ori: ASQ50723.1 Feature: domain Description: Staph_reg_Sar Location: 1476862-1477156 bp Feature: domain Description: Staph_reg_Sar Location: 1 476862-1 4771 56 bp Feature: gene Location: 1477602-1478471 bp Feature: gene Location: 1478561-1479847 bp Ori: ASQ50725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1478777-1479389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 478777-1 479389 bp Feature: domain Description: GIIM Note: maturase Location: 1479452-1479683 bp Feature: domain Description: GIIM Note: maturase Location: 1 479452-1 479683 bp Feature: gene Location: 1480405-1480911 bp Ori: ASQ50726.1 Feature: domain Description: SNase Location: 1480591-1480906 bp Feature: domain Description: SNase Location: 1 480591 -1 480906 bp Feature: gene Location: 1481051-1481248 bp Feature: gene Location: 1487279-1487458 bp Ori: ASQ50734.1 Feature: domain Description: DUF1381 Location: 1487288-1487414 bp Feature: domain Description: DUF1 381 Location: 1 487288-1 48741 4 bp Feature: gene Location: 1488577-1488810 bp Ori: ASQ50735.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1488607-1488736 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 488607-1 488736 bp Feature: gene Location: 1488939-1490225 bp Ori: ASQ50736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1489155-1489767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4891 55-1 489767 bp Feature: domain Description: GIIM Note: maturase Location: 1489830-1490061 bp Feature: domain Description: GIIM Note: maturase Location: 1 489830-1 490061 bp Feature: gene Location: 1490774-1492114 bp Ori: ASQ50737.1 Feature: domain Description: GlnA Location: 1490795-1492106 bp Feature: domain Description: GlnA Location: 1 490795-1 4921 06 bp Feature: gene Location: 1492138-1492506 bp Ori: ASQ50738.1 Feature: domain Description: HTH_GlnR-like Location: 1492174-1492432 bp Feature: domain Description: HTH_GlnR-like Location: 1 4921 74-1 492432 bp Feature: gene Location: 1717448-1720897 bp Ori: ASQ50939.1 Feature: domain Description: PycA Location: 1717454-1720886 bp Feature: domain Description: PycA Location: 1 71 7454-1 720886 bp Feature: gene Location: 1721096-1721278 bp Ori: ASQ50940.1 Feature: domain Description: COG3860 Location: 1721111-1721231 bp Feature: domain Description: COG3860 Location: 1 721 1 1 1 -1 721 231 bp Feature: gene Location: 1721447-1722733 bp Ori: ASQ50941.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721663-1722275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 721 663-1 722275 bp Feature: domain Description: GIIM Note: maturase Location: 1722338-1722569 bp Feature: domain Description: GIIM Note: maturase Location: 1 722338-1 722569 bp Feature: gene Location: 1723326-1724558 bp Ori: ASQ50942.1 Feature: domain Description: FtsW Location: 1723365-1724505 bp Feature: domain Description: FtsW Location: 1 723365-1 724505 bp Feature: gene Location: 1724629-1724904 bp Ori: ASQ50943.1 Feature: domain Description: YlaN Location: 1724635-1724899 bp Feature: domain Description: YlaN Location: 1 724635-1 724899 bp Feature: gene Location: 1855231-1856517 bp Ori: ASQ51053.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1855447-1856059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 855447-1 856059 bp Feature: domain Description: GIIM Note: maturase Location: 1856122-1856353 bp Feature: domain Description: GIIM Note: maturase Location: 1 8561 22-1 856353 bp Feature: gene Location: 1857082-1857396 bp Feature: gene Location: 1857430-1857612 bp Feature: gene Location: 1930827-1931651 bp Ori: ASQ51112.1 Feature: domain Description: HAD_Pase Location: 1930842-1931616 bp Feature: domain Description: HAD_Pase Location: 1 930842-1 931 61 6 bp Feature: gene Location: 1931682-1933007 bp Ori: ASQ51113.1 Feature: domain Description: PRK13512 Location: 1931691-1932999 bp Feature: domain Description: PRK1 351 2 Location: 1 931 691 -1 932999 bp Feature: gene Location: 1933086-1934372 bp Ori: ASQ51114.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933302-1933914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 933302-1 93391 4 bp Feature: domain Description: GIIM Note: maturase Location: 1933977-1934208 bp Feature: domain Description: GIIM Note: maturase Location: 1 933977-1 934208 bp Feature: gene Location: 1934981-1935370 bp Ori: ASQ51115.1 Feature: domain Description: PRK13673 Location: 1934993-1935347 bp Feature: domain Description: PRK1 3673 Location: 1 934993-1 935347 bp Feature: gene Location: 1935706-1936611 bp Ori: ASQ51116.1 Feature: domain Description: MhpD Location: 1935856-1936603 bp Feature: domain Description: MhpD Location: 1 935856-1 936603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), Eco57I (pfam07669), TaqI_C (pfam12950), COG3464 (Transposase ), RVT-UG2, YeiB (COG2311), UDP_AE_SDR_e (cd05256), Glyphos_transf (pfam04464), GT4_GT28_WabH-like (cd03811), RVT-GII
GIIM (pfam08388), COG3333 (TctA family transporter ), TctB (pfam07331), CitB (TIGR02484), NarK (COG2223), M20_ArgE_RocB (cd05654), DUF3139 (pfam11337), rpsI (PRK00132), COG2865 (Predicted transcriptional regulator, contains HTH domain ), nicotinamidase_related (cd01014)
GlpR (COG1349), EVE (pfam01878), antiport_nhaC (TIGR00931), YuxK (COG3011), CcmA (COG4133), EcsB (pfam05975), HmoA (COG2329), hemE (TIGR01464), ABC_sbcCD (cd03279), SbcD (COG0420)
CcdC (COG4846), PRK01844 (YneF family protein), Staph_reg_Sar (TIGR01889), SNase (pfam00565), DUF1381 (pfam07129), INT_ICEBs1_C_like (cd01189), GlnA (TIGR00653), HTH_GlnR-like (cd01105), PycA (COG1038), COG3860 (Uncharacterized protein, DUF2087 family )
FtsW (COG0772), YlaN (COG4838), HAD_Pase (cd16418), PRK13512 (coenzyme A disulfide reductase; Provisional), PRK13673 (hypothetical protein; Provisional), MhpD (COG3971)