myRT

myRT report for GCA_002950945.1_ASM295094v1

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Seq: CP012673.1 Sorangium cellulosum strain So ce26 chromosome, complete genome (14557589 bp)
Overview 1 RT 1: 225855-238687 bp 2 RT 2: 1439238-1447282 bp 3 RT 3: 3080973-3093381 bp 4 RT 4: 3149407-3159083 bp 5 RT 5: 6833700-6842407 bp 6 RT 6: 12997553-13006210 bp 7 RT 7: 13469177-13474162 bp 8 RT 8: 14486968-14490692 bp Neighborhood of RT #1 [225855, 239274] COG4584 COG4584 IstB_IS21 RVT-GII GIIM rve_3 COG4584 Rhs_assc_core RVT-GII DDE_5 Neighborhood of RT #2 [1439238, 1447689] RVT-GII GIIM DUF2169 VI_Rhs_Vgr Neighborhood of RT #3 [3080973, 3093419] RVT-Retrons SWIM WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #4 [3149407, 3159115] DUF2283 RHS_repeat RHS_repeat RHS_repeat RHS_repeat RVT-GII Rhs_assc_core RHS_repeat RHS_repeat RHS_repeat RHS_repeat YD_repeat_2x RVT-GII Rhs_assc_core COG5529 Cys_rich_CPCC Neighborhood of RT #5 [6833700, 6842430] GH16_laminarinase_like CBM_4_9 RVT-GII GIIM HXXSHH PSD3 PSD5 PSD4 PSCyt3 PSD2 Neighborhood of RT #6 [12997553, 13006923] Toluene_X RVT-GII HTTM YuxK HTTM DUF393 Neighborhood of RT #7 [13469177, 13474162] ftrA COG3558 RVT-GII NhoA Neighborhood of RT #8 [14486968, 14490692] RVT-GII Rhs_assc_core DUF2380 Feature: gene Location: 225855-227510 bp Ori: AUX38806.1 Gene: isftu1 Feature: domain Description: COG4584 Location: 225939-226764 bp Feature: domain Description: COG4584 Location: 225939-226764 bp Feature: domain Description: COG4584 Location: 226893-227373 bp Feature: domain Description: COG4584 Location: 226893-227373 bp Feature: gene Location: 227452-228159 bp Ori: AUX38807.1 Feature: domain Description: IstB_IS21 Location: 227560-228091 bp Feature: domain Description: IstB_IS21 Location: 227560-228091 bp Feature: gene Location: 229056-230024 bp Ori: AUX38808.1 Gene: dnaE2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229062-229680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229062-229680 bp Feature: domain Description: GIIM Note: maturase Location: 229752-229965 bp Feature: domain Description: GIIM Note: maturase Location: 229752-229965 bp Feature: gene Location: 230768-231196 bp Ori: AUX38809.1 Feature: domain Description: rve_3 Location: 230825-231017 bp Feature: domain Description: rve_3 Location: 230825-231 01 7 bp Feature: gene Location: 231668-232216 bp Feature: gene Location: 233219-234760 bp Ori: AUX38812.1 Gene: int Feature: domain Description: COG4584 Location: 233309-234065 bp Feature: domain Description: COG4584 Location: 233309-234065 bp Feature: gene Location: 235580-236179 bp Ori: AUX38813.1 Feature: domain Description: Rhs_assc_core Location: 235592-235664 bp Feature: domain Description: Rhs_assc_core Location: 235592-235664 bp Feature: gene Location: 236296-237702 bp Ori: AUX38814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236623-237313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236623-23731 3 bp Feature: gene Location: 237919-239274 bp Ori: AUX38815.1 Feature: domain Description: DDE_5 Location: 237976-238687 bp Feature: domain Description: DDE_5 Location: 237976-238687 bp Feature: gene Location: 1439238-1440680 bp Feature: gene Location: 1440682-1441668 bp Feature: gene Location: 1442037-1442711 bp Ori: AUX39725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1442205-1442328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 442205-1 442328 bp Feature: domain Description: GIIM Note: maturase Location: 1442472-1442691 bp Feature: domain Description: GIIM Note: maturase Location: 1 442472-1 442691 bp Feature: gene Location: 1443306-1445090 bp Ori: AUX39726.1 Feature: domain Description: DUF2169 Location: 1443309-1444140 bp Feature: domain Description: DUF21 69 Location: 1 443309-1 4441 40 bp Feature: gene Location: 1445686-1447689 bp Ori: AUX39727.1 Feature: domain Description: VI_Rhs_Vgr Location: 1445731-1447282 bp Feature: domain Description: VI_Rhs_Vgr Location: 1 445731 -1 447282 bp Feature: gene Location: 3080973-3081584 bp Feature: gene Location: 3081697-3082431 bp Feature: gene Location: 3082846-3084321 bp Ori: AUX40946.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3083407-3084064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3083407-3084064 bp Feature: gene Location: 3084730-3086649 bp Ori: AUX40947.1 Feature: domain Description: SWIM Location: 3086263-3086347 bp Feature: domain Description: SWIM Location: 3086263-3086347 bp Feature: gene Location: 3086646-3093419 bp Ori: AUX40948.1 Feature: domain Description: WD40 Location: 3086931-3087030 bp Feature: domain Description: WD40 Location: 3086931 -3087030 bp Feature: domain Description: WD40 Location: 3087222-3087312 bp Feature: domain Description: WD40 Location: 3087222-308731 2 bp Feature: domain Description: HEAT_2 Location: 3087735-3087984 bp Feature: domain Description: HEAT_2 Location: 3087735-3087984 bp Feature: domain Description: HEAT_2 Location: 3088623-3088872 bp Feature: domain Description: HEAT_2 Location: 3088623-3088872 bp Feature: domain Description: HEAT_2 Location: 3088965-3089112 bp Feature: domain Description: HEAT_2 Location: 3088965-30891 1 2 bp Feature: domain Description: HEAT_2 Location: 3089127-3089319 bp Feature: domain Description: HEAT_2 Location: 30891 27-308931 9 bp Feature: domain Description: HEAT_2 Location: 3089319-3089463 bp Feature: domain Description: HEAT_2 Location: 308931 9-3089463 bp Feature: domain Description: HEAT_2 Location: 3089643-3089769 bp Feature: domain Description: HEAT_2 Location: 3089643-3089769 bp Feature: domain Description: HEAT_2 Location: 3089799-3090009 bp Feature: domain Description: HEAT_2 Location: 3089799-3090009 bp Feature: domain Description: HEAT_2 Location: 3090045-3090201 bp Feature: domain Description: HEAT_2 Location: 3090045-3090201 bp Feature: domain Description: HEAT_2 Location: 3090750-3090912 bp Feature: domain Description: HEAT_2 Location: 3090750-309091 2 bp Feature: domain Description: HEAT_2 Location: 3091041-3091293 bp Feature: domain Description: HEAT_2 Location: 3091 041 -3091 293 bp Feature: domain Description: HEAT_2 Location: 3091326-3091491 bp Feature: domain Description: HEAT_2 Location: 3091 326-3091 491 bp Feature: domain Description: HEAT_2 Location: 3091548-3091704 bp Feature: domain Description: HEAT_2 Location: 3091 548-3091 704 bp Feature: domain Description: HEAT_2 Location: 3092010-3092220 bp Feature: domain Description: HEAT_2 Location: 309201 0-3092220 bp Feature: domain Description: HEAT_2 Location: 3092751-3092982 bp Feature: domain Description: HEAT_2 Location: 3092751 -3092982 bp Feature: domain Description: HEAT_2 Location: 3093156-3093381 bp Feature: domain Description: HEAT_2 Location: 30931 56-3093381 bp Feature: gene Location: 3149407-3149625 bp Ori: AUX40982.1 Feature: domain Description: DUF2283 Location: 3149455-3149599 bp Feature: domain Description: DUF2283 Location: 31 49455-31 49599 bp Feature: gene Location: 3149637-3150827 bp Ori: AUX40983.1 Feature: domain Description: RHS_repeat Location: 3149898-3149979 bp Feature: domain Description: RHS_repeat Location: 31 49898-31 49979 bp Feature: domain Description: RHS_repeat Location: 3150003-3150054 bp Feature: domain Description: RHS_repeat Location: 31 50003-31 50054 bp Feature: domain Description: RHS_repeat Location: 3150132-3150177 bp Feature: domain Description: RHS_repeat Location: 31 501 32-31 501 77 bp Feature: domain Description: RHS_repeat Location: 3150258-3150300 bp Feature: domain Description: RHS_repeat Location: 31 50258-31 50300 bp Feature: gene Location: 3151164-3152570 bp Ori: AUX40984.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3151494-3152181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 51 494-31 521 81 bp Feature: gene Location: 3152549-3153151 bp Ori: AUX40985.1 Feature: domain Description: Rhs_assc_core Location: 3152654-3152771 bp Feature: domain Description: Rhs_assc_core Location: 31 52654-31 52771 bp Feature: gene Location: 3153394-3154557 bp Feature: gene Location: 3154618-3156078 bp Ori: AUX40987.1 Feature: domain Description: RHS_repeat Location: 3154627-3154690 bp Feature: domain Description: RHS_repeat Location: 31 54627-31 54690 bp Feature: domain Description: RHS_repeat Location: 3154723-3154792 bp Feature: domain Description: RHS_repeat Location: 31 54723-31 54792 bp Feature: domain Description: RHS_repeat Location: 3155254-3155305 bp Feature: domain Description: RHS_repeat Location: 31 55254-31 55305 bp Feature: domain Description: RHS_repeat Location: 3155383-3155428 bp Feature: domain Description: RHS_repeat Location: 31 55383-31 55428 bp Feature: domain Description: YD_repeat_2x Location: 3155497-3155554 bp Feature: domain Description: YD_repeat_2x Location: 31 55497-31 55554 bp Feature: gene Location: 3156415-3157821 bp Ori: AUX40988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3156745-3157432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 56745-31 57432 bp Feature: gene Location: 3157800-3158882 bp Ori: AUX40989.1 Feature: domain Description: Rhs_assc_core Location: 3157905-3158022 bp Feature: domain Description: Rhs_assc_core Location: 31 57905-31 58022 bp Feature: domain Description: COG5529 Location: 3158607-3158862 bp Feature: domain Description: COG5529 Location: 31 58607-31 58862 bp Feature: gene Location: 3158879-3159115 bp Ori: AUX40990.1 Feature: domain Description: Cys_rich_CPCC Location: 3158900-3159083 bp Feature: domain Description: Cys_rich_CPCC Location: 31 58900-31 59083 bp Feature: gene Location: 6833700-6835922 bp Ori: AUX43578.1 Feature: domain Description: GH16_laminarinase_like Location: 6834114-6835260 bp Feature: domain Description: GH1 6_laminarinase_like Location: 68341 1 4-6835260 bp Feature: domain Description: CBM_4_9 Location: 6835335-6835728 bp Feature: domain Description: CBM_4_9 Location: 6835335-6835728 bp Feature: gene Location: 6836601-6836903 bp Feature: gene Location: 6837125-6838408 bp Ori: AUX43580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6837413-6838061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683741 3-6838061 bp Feature: domain Description: GIIM Note: maturase Location: 6838139-6838346 bp Feature: domain Description: GIIM Note: maturase Location: 68381 39-6838346 bp Feature: gene Location: 6839146-6840741 bp Ori: AUX43581.1 Feature: domain Description: HXXSHH Location: 6839278-6840247 bp Feature: domain Description: HXXSHH Location: 6839278-6840247 bp Feature: gene Location: 6840757-6842430 bp Ori: AUX43582.1 Feature: domain Description: PSD3 Location: 6840952-6841129 bp Feature: domain Description: PSD3 Location: 6840952-6841 1 29 bp Feature: domain Description: PSD5 Location: 6841183-6841360 bp Feature: domain Description: PSD5 Location: 6841 1 83-6841 360 bp Feature: domain Description: PSD4 Location: 6841396-6841789 bp Feature: domain Description: PSD4 Location: 6841 396-6841 789 bp Feature: domain Description: PSCyt3 Location: 6841846-6842134 bp Feature: domain Description: PSCyt3 Location: 6841 846-68421 34 bp Feature: domain Description: PSD2 Location: 6842200-6842407 bp Feature: domain Description: PSD2 Location: 6842200-6842407 bp Feature: gene Location: 12997553-12999394 bp Feature: gene Location: 12999424-13000902 bp Ori: AUX48054.1 Feature: domain Description: Toluene_X Location: 12999583-13000777 bp Feature: domain Description: Toluene_X Location: 1 2999583-1 3000777 bp Feature: gene Location: 13001135-13002139 bp Ori: AUX48055.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13001423-13002071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3001 423-1 3002071 bp Feature: gene Location: 13002766-13004868 bp Ori: AUX48056.1 Feature: domain Description: HTTM Location: 13002958-13003807 bp Feature: domain Description: HTTM Location: 1 3002958-1 3003807 bp Feature: domain Description: YuxK Location: 13003870-13004140 bp Feature: domain Description: YuxK Location: 1 3003870-1 30041 40 bp Feature: gene Location: 13004878-13006923 bp Ori: AUX48057.1 Feature: domain Description: HTTM Location: 13004911-13005799 bp Feature: domain Description: HTTM Location: 1 300491 1 -1 3005799 bp Feature: domain Description: DUF393 Location: 13005853-13006210 bp Feature: domain Description: DUF393 Location: 1 3005853-1 300621 0 bp Feature: gene Location: 13469177-13470337 bp Ori: AUX48400.1 Gene: araC Feature: domain Description: ftrA Location: 13469390-13470323 bp Feature: domain Description: ftrA Location: 1 3469390-1 3470323 bp Feature: gene Location: 13470561-13471043 bp Ori: AUX48401.1 Gene: rplU Feature: domain Description: COG3558 Location: 13470585-13471041 bp Feature: domain Description: COG3558 Location: 1 3470585-1 3471 041 bp Feature: gene Location: 13471776-13472780 bp Ori: AUX48402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13472064-13472712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3472064-1 347271 2 bp Feature: gene Location: 13473111-13473968 bp Ori: AUX48403.1 Gene: nhoA Feature: domain Description: NhoA Location: 13473117-13473873 bp Feature: domain Description: NhoA Location: 1 34731 1 7-1 3473873 bp Feature: gene Location: 13473965-13474162 bp Feature: gene Location: 14486968-14487219 bp Feature: gene Location: 14487142-14487495 bp Feature: gene Location: 14487832-14489238 bp Ori: AUX49127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14488159-14488849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44881 59-1 4488849 bp Feature: gene Location: 14489217-14490338 bp Ori: AUX49128.1 Feature: domain Description: Rhs_assc_core Location: 14489322-14489439 bp Feature: domain Description: Rhs_assc_core Location: 1 4489322-1 4489439 bp Feature: domain Description: DUF2380 Location: 14490096-14490318 bp Feature: domain Description: DUF2380 Location: 1 4490096-1 449031 8 bp Feature: gene Location: 14490393-14490692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), rve_3 (pfam13683), Rhs_assc_core (TIGR03696), DDE_5 (pfam13546), DUF2169 (pfam09937), VI_Rhs_Vgr (TIGR03361), RVT-Retrons
SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646), DUF2283 (pfam10049), RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), COG5529 (Pyocin large subunit ), Cys_rich_CPCC (pfam14206), GH16_laminarinase_like (cd08023), CBM_4_9 (pfam02018)
HXXSHH (pfam07586), PSD3 (pfam07626), PSD5 (pfam07637), PSD4 (pfam07631), PSCyt3 (pfam07627), PSD2 (pfam07624), Toluene_X (pfam03349), HTTM (smart00752), YuxK (COG3011), DUF393 (pfam04134)
ftrA (PRK09393), COG3558 (Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily ), NhoA (COG2162), DUF2380 (pfam09533)