myRT

myRT report for GCA_002953175.1_ASM295317v1

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Seq: CP026379.1 Salmonella enterica subsp. enterica serovar Senftenberg strain N17-509 chromosome, complete genome (5121989 bp)
Overview 1 RT 1: 727957-731196 bp 2 RT 2: 1117554-1122072 bp Neighborhood of RT #1 [727957, 731195] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1117554, 1122077] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM HNHc SPEC COG3436 COG3436 Feature: gene Location: 727957-728169 bp Feature: gene Location: 728317-728496 bp Feature: domain Description: PHA02517 Location: 728320-728497 bp Feature: domain Description: PHA0251 7 Location: 728320-728497 bp Feature: gene Location: 728577-730100 bp Ori: AUX96201.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 728850-729582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 728850-729582 bp Feature: domain Description: GIIM Note: maturase Location: 729657-729855 bp Feature: domain Description: GIIM Note: maturase Location: 729657-729855 bp Feature: gene Location: 730394-730825 bp Feature: gene Location: 730758-731195 bp Feature: domain Description: PHA02517 Location: 730860-731196 bp Feature: domain Description: PHA0251 7 Location: 730860-731 1 96 bp Feature: gene Location: 1117554-1117736 bp Feature: gene Location: 1117779-1118732 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1117782-1118580 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 1 7782-1 1 1 8580 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1118601-1118712 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 1 8601 -1 1 1 871 2 bp Feature: gene Location: 1118806-1120494 bp Ori: AUX96554.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1118854-1119097 bp Feature: domain Description: RVT_N Location: 1 1 1 8854-1 1 1 9097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1119142-1119781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 91 42-1 1 1 9781 bp Feature: domain Description: GIIM Note: maturase Location: 1119838-1120072 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 9838-1 1 20072 bp Feature: domain Description: HNHc Note: nucleases Location: 1120288-1120450 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 20288-1 1 20450 bp Feature: gene Location: 1121100-1121681 bp Feature: domain Description: SPEC Location: 1121115-1121340 bp Feature: domain Description: SPEC Location: 1 1 21 1 1 5-1 1 21 340 bp Feature: domain Description: COG3436 Location: 1121373-1121682 bp Feature: domain Description: COG3436 Location: 1 1 21 373-1 1 21 682 bp Feature: gene Location: 1121730-1122077 bp Ori: AUX96555.1 Feature: domain Description: COG3436 Location: 1121736-1122072 bp Feature: domain Description: COG3436 Location: 1 1 21 736-1 1 22072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), HNHc (smart00507), SPEC (smart00150), COG3436 (Transposase )