myRT

myRT report for GCA_002966775.1_ASM296677v1

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Seq: CP023269.1 Pseudomonas sp. MYb193 chromosome, complete genome (6211636 bp)
Overview 1 RT 1: 1607793-1612297 bp 2 RT 2: 1896882-1901258 bp 3 RT 3: 2527231-2541281 bp 4 RT 4: 3190685-3193320 bp 5 RT 5: 5047101-5052346 bp 6 RT 6: 5593845-5600019 bp Neighborhood of RT #1 [1607793, 1612297] RVT-GII GIIM PitA Neighborhood of RT #2 [1896882, 1901272] rpsA RVT-GII GIIM hip Neighborhood of RT #3 [2527231, 2541328] autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt autotrns_rpt PRK15319 RVT-GII GIIM COG4683 HTH_37 Neighborhood of RT #4 [3190685, 3193358] RVT-GII GIIM PRK11597 Neighborhood of RT #5 [5047101, 5052465] Xc-1258_like PRK09082 RVT-GII GIIM GTPase_EngA Neighborhood of RT #6 [5593845, 5600054] argD LysR RVT-GII GIIM PTZ00456 Feature: gene Location: 1607793-1607954 bp Feature: gene Location: 1608275-1608603 bp Feature: gene Location: 1608728-1610020 bp Ori: AVJ25482.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1608989-1609604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 608989-1 609604 bp Feature: domain Description: GIIM Note: maturase Location: 1609658-1609862 bp Feature: domain Description: GIIM Note: maturase Location: 1 609658-1 609862 bp Feature: gene Location: 1610306-1611781 bp Ori: AVJ21584.1 Feature: domain Description: PitA Location: 1610348-1611767 bp Feature: domain Description: PitA Location: 1 61 0348-1 61 1 767 bp Feature: gene Location: 1612097-1612297 bp Feature: gene Location: 1896882-1898567 bp Ori: AVJ21843.1 Feature: domain Description: rpsA Location: 1896885-1898556 bp Feature: domain Description: rpsA Location: 1 896885-1 898556 bp Feature: gene Location: 1898616-1898944 bp Feature: gene Location: 1899068-1900360 bp Ori: AVJ25488.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1899329-1899944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 899329-1 899944 bp Feature: domain Description: GIIM Note: maturase Location: 1899998-1900220 bp Feature: domain Description: GIIM Note: maturase Location: 1 899998-1 900220 bp Feature: gene Location: 1900561-1900845 bp Feature: gene Location: 1900976-1901272 bp Ori: AVJ21845.1 Gene: ihfB Feature: domain Description: hip Location: 1900979-1901258 bp Feature: domain Description: hip Location: 1 900979-1 901 258 bp Feature: gene Location: 2527231-2538618 bp Ori: AVJ22362.1 Feature: domain Description: autotrns_rpt Location: 2528449-2528542 bp Feature: domain Description: autotrns_rpt Location: 2528449-2528542 bp Feature: domain Description: autotrns_rpt Location: 2528707-2528800 bp Feature: domain Description: autotrns_rpt Location: 2528707-2528800 bp Feature: domain Description: autotrns_rpt Location: 2528965-2529058 bp Feature: domain Description: autotrns_rpt Location: 2528965-2529058 bp Feature: domain Description: autotrns_rpt Location: 2529223-2529316 bp Feature: domain Description: autotrns_rpt Location: 2529223-252931 6 bp Feature: domain Description: autotrns_rpt Location: 2529481-2529574 bp Feature: domain Description: autotrns_rpt Location: 2529481 -2529574 bp Feature: domain Description: autotrns_rpt Location: 2529739-2529826 bp Feature: domain Description: autotrns_rpt Location: 2529739-2529826 bp Feature: domain Description: autotrns_rpt Location: 2530024-2530117 bp Feature: domain Description: autotrns_rpt Location: 2530024-25301 1 7 bp Feature: domain Description: autotrns_rpt Location: 2530864-2530954 bp Feature: domain Description: autotrns_rpt Location: 2530864-2530954 bp Feature: domain Description: autotrns_rpt Location: 2531119-2531206 bp Feature: domain Description: autotrns_rpt Location: 2531 1 1 9-2531 206 bp Feature: domain Description: autotrns_rpt Location: 2531377-2531470 bp Feature: domain Description: autotrns_rpt Location: 2531 377-2531 470 bp Feature: domain Description: autotrns_rpt Location: 2531635-2531728 bp Feature: domain Description: autotrns_rpt Location: 2531 635-2531 728 bp Feature: domain Description: autotrns_rpt Location: 2531896-2531980 bp Feature: domain Description: autotrns_rpt Location: 2531 896-2531 980 bp Feature: domain Description: autotrns_rpt Location: 2532181-2532274 bp Feature: domain Description: autotrns_rpt Location: 25321 81 -2532274 bp Feature: domain Description: autotrns_rpt Location: 2533042-2533135 bp Feature: domain Description: autotrns_rpt Location: 2533042-25331 35 bp Feature: domain Description: autotrns_rpt Location: 2533300-2533387 bp Feature: domain Description: autotrns_rpt Location: 2533300-2533387 bp Feature: domain Description: autotrns_rpt Location: 2533558-2533651 bp Feature: domain Description: autotrns_rpt Location: 2533558-2533651 bp Feature: domain Description: autotrns_rpt Location: 2533816-2533909 bp Feature: domain Description: autotrns_rpt Location: 253381 6-2533909 bp Feature: domain Description: autotrns_rpt Location: 2534074-2534158 bp Feature: domain Description: autotrns_rpt Location: 2534074-25341 58 bp Feature: domain Description: autotrns_rpt Location: 2534368-2534452 bp Feature: domain Description: autotrns_rpt Location: 2534368-2534452 bp Feature: domain Description: autotrns_rpt Location: 2535223-2535316 bp Feature: domain Description: autotrns_rpt Location: 2535223-253531 6 bp Feature: domain Description: autotrns_rpt Location: 2535481-2535568 bp Feature: domain Description: autotrns_rpt Location: 2535481 -2535568 bp Feature: domain Description: autotrns_rpt Location: 2535739-2535820 bp Feature: domain Description: autotrns_rpt Location: 2535739-2535820 bp Feature: domain Description: autotrns_rpt Location: 2535934-2536024 bp Feature: domain Description: autotrns_rpt Location: 2535934-2536024 bp Feature: domain Description: autotrns_rpt Location: 2536783-2536870 bp Feature: domain Description: autotrns_rpt Location: 2536783-2536870 bp Feature: domain Description: autotrns_rpt Location: 2536975-2537068 bp Feature: domain Description: autotrns_rpt Location: 2536975-2537068 bp Feature: domain Description: PRK15319 Location: 2537857-2538412 bp Feature: domain Description: PRK1 531 9 Location: 2537857-253841 2 bp Feature: gene Location: 2538662-2538990 bp Feature: gene Location: 2539115-2540407 bp Ori: AVJ25514.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2539376-2539991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2539376-2539991 bp Feature: domain Description: GIIM Note: maturase Location: 2540045-2540249 bp Feature: domain Description: GIIM Note: maturase Location: 2540045-2540249 bp Feature: gene Location: 2540665-2541030 bp Ori: AVJ22363.1 Feature: domain Description: COG4683 Location: 2540668-2541016 bp Feature: domain Description: COG4683 Location: 2540668-2541 01 6 bp Feature: gene Location: 2541023-2541328 bp Ori: AVJ22364.1 Feature: domain Description: HTH_37 Location: 2541113-2541281 bp Feature: domain Description: HTH_37 Location: 2541 1 1 3-2541 281 bp Feature: gene Location: 3190685-3190798 bp Feature: gene Location: 3190898-3190999 bp Feature: gene Location: 3191110-3192402 bp Ori: AVJ25535.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3191371-3191986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 91 371 -31 91 986 bp Feature: domain Description: GIIM Note: maturase Location: 3192040-3192262 bp Feature: domain Description: GIIM Note: maturase Location: 31 92040-31 92262 bp Feature: gene Location: 3192527-3192855 bp Feature: gene Location: 3192900-3193358 bp Ori: AVJ22861.1 Feature: domain Description: PRK11597 Location: 3192918-3193320 bp Feature: domain Description: PRK1 1 597 Location: 31 9291 8-31 93320 bp Feature: gene Location: 5047101-5047892 bp Ori: AVJ24404.1 Feature: domain Description: Xc-1258_like Location: 5047131-5047884 bp Feature: domain Description: Xc-1 258_like Location: 50471 31 -5047884 bp Feature: gene Location: 5047880-5049028 bp Ori: AVJ24405.1 Feature: domain Description: PRK09082 Location: 5047883-5049023 bp Feature: domain Description: PRK09082 Location: 5047883-5049023 bp Feature: gene Location: 5049190-5050482 bp Ori: AVJ25595.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5049451-5050066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5049451 -5050066 bp Feature: domain Description: GIIM Note: maturase Location: 5050120-5050342 bp Feature: domain Description: GIIM Note: maturase Location: 50501 20-5050342 bp Feature: gene Location: 5050605-5050933 bp Feature: gene Location: 5050996-5052465 bp Ori: AVJ24406.1 Gene: der Feature: domain Description: GTPase_EngA Location: 5051011-5052346 bp Feature: domain Description: GTPase_EngA Location: 5051 01 1 -5052346 bp Feature: gene Location: 5593845-5595107 bp Ori: AVJ24896.1 Feature: domain Description: argD Location: 5593908-5595054 bp Feature: domain Description: argD Location: 5593908-5595054 bp Feature: gene Location: 5595317-5596216 bp Ori: AVJ24897.1 Feature: domain Description: LysR Location: 5595320-5596184 bp Feature: domain Description: LysR Location: 5595320-55961 84 bp Feature: gene Location: 5596318-5597610 bp Ori: AVJ25608.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5596579-5597194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5596579-55971 94 bp Feature: domain Description: GIIM Note: maturase Location: 5597248-5597470 bp Feature: domain Description: GIIM Note: maturase Location: 5597248-5597470 bp Feature: gene Location: 5597734-5598062 bp Feature: gene Location: 5598276-5600054 bp Ori: AVJ24898.1 Feature: domain Description: PTZ00456 Location: 5598285-5600019 bp Feature: domain Description: PTZ00456 Location: 5598285-560001 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PitA (COG0306), rpsA (TIGR00717), hip (TIGR00988), autotrns_rpt (TIGR02601), PRK15319 (fibronectin-binding autotransporter adhesin ShdA), COG4683 (Uncharacterized protein ), HTH_37 (pfam13744), PRK11597 (heat shock chaperone IbpB; Provisional)
Xc-1258_like (cd07575), PRK09082 (methionine aminotransferase; Validated), GTPase_EngA (TIGR03594), argD (TIGR00707), LysR (COG0583), PTZ00456 (acyl-CoA dehydrogenase; Provisional)