myRT

myRT report for GCA_002968695.1_ASM296869v1

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Seq: CP027174.1 Pseudomonas aeruginosa strain AR_0230 chromosome, complete genome (7012922 bp)
Overview 1 RT 1: 6218678-6228984 bp Neighborhood of RT #1 [6218678, 6228986] COG3177 RVT-GII YkfC HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 6218678-6219799 bp Ori: AVK28110.1 Feature: domain Description: COG3177 Location: 6218696-6219788 bp Feature: domain Description: COG31 77 Location: 621 8696-621 9788 bp Feature: gene Location: 6220058-6220195 bp Feature: gene Location: 6220523-6221806 bp Ori: AVK25142.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6220526-6221102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6220526-6221 1 02 bp Feature: domain Description: YkfC Location: 6221312-6221405 bp Feature: domain Description: YkfC Location: 6221 31 2-6221 405 bp Feature: domain Description: HNH Note: nucleases Location: 6221639-6221777 bp Feature: domain Description: HNH Note: nucleases Location: 6221 639-6221 777 bp Feature: gene Location: 6223289-6227026 bp Ori: AVK29165.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 6223397-6224054 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 6223397-6224054 bp Feature: domain Description: PRK09776 Location: 6224267-6224738 bp Feature: domain Description: PRK09776 Location: 6224267-6224738 bp Feature: domain Description: PAS Location: 6224810-6225320 bp Feature: domain Description: PAS Location: 622481 0-6225320 bp Feature: domain Description: PRK10060 Location: 6225329-6226976 bp Feature: domain Description: PRK1 0060 Location: 6225329-6226976 bp Feature: gene Location: 6227133-6228986 bp Ori: AVK29358.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 6227145-6228984 bp Feature: domain Description: PRK05658 Location: 62271 45-6228984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT-GII, YkfC (COG3344), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)