myRT

myRT report for GCA_002968955.1_ASM296895v1

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Seq: CP027166.1 Pseudomonas aeruginosa strain AR_0357 chromosome, complete genome (7162784 bp)
Overview 1 RT 1: 940924-949795 bp 2 RT 2: 966060-975964 bp 3 RT 3: 2002440-2006166 bp 4 RT 4: 3428715-3434673 bp 5 RT 5: 3833902-3839556 bp 6 RT 6: 5998023-6004144 bp Neighborhood of RT #1 [940924, 949803] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [966060, 976065] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Neighborhood of RT #3 [2002440, 2006180] RpmB rpmG RVT_N RVT-GII YkfC HNHc COG3450 Neighborhood of RT #4 [3428715, 3434673] conj_PilL HepA SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #5 [3833902, 3840512] DEXHc_Snf SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Neighborhood of RT #6 [5998023, 6004144] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF Feature: gene Location: 940924-941598 bp Ori: AVJ97729.1 Feature: domain Description: NTP_transferase_like_1 Location: 940930-941569 bp Feature: domain Description: NTP_transferase_like_1 Location: 940930-941 569 bp Feature: gene Location: 941595-942611 bp Ori: AVJ98812.1 Feature: domain Description: COG3178 Location: 941598-942597 bp Feature: domain Description: COG31 78 Location: 941 598-942597 bp Feature: gene Location: 943884-945596 bp Ori: AVK00376.1 Feature: domain Description: RVT_N Location: 943941-944184 bp Feature: domain Description: RVT_N Location: 943941 -9441 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944229-944865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944229-944865 bp Feature: domain Description: YkfC Location: 945072-945225 bp Feature: domain Description: YkfC Location: 945072-945225 bp Feature: domain Description: HNH Note: nucleases Location: 945402-945540 bp Feature: domain Description: HNH Note: nucleases Location: 945402-945540 bp Feature: gene Location: 945747-948530 bp Ori: AVK02455.1 Feature: domain Description: LptD Location: 945924-948516 bp Feature: domain Description: LptD Location: 945924-94851 6 bp Feature: gene Location: 948589-949803 bp Ori: AVJ96862.1 Gene: surA Feature: domain Description: PRK10770 Location: 948601-949795 bp Feature: domain Description: PRK1 0770 Location: 948601 -949795 bp Feature: gene Location: 966060-967913 bp Ori: AVJ96566.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 966072-967911 bp Feature: domain Description: PRK05658 Location: 966072-96791 1 bp Feature: gene Location: 968020-971757 bp Ori: AVJ97497.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 968128-968785 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9681 28-968785 bp Feature: domain Description: PRK09776 Location: 968998-969469 bp Feature: domain Description: PRK09776 Location: 968998-969469 bp Feature: domain Description: PAS Location: 969529-970051 bp Feature: domain Description: PAS Location: 969529-970051 bp Feature: domain Description: PRK10060 Location: 970060-971707 bp Feature: domain Description: PRK1 0060 Location: 970060-971 707 bp Feature: gene Location: 972838-974523 bp Ori: AVK01033.1 Feature: domain Description: RVT_N Location: 972895-973135 bp Feature: domain Description: RVT_N Location: 972895-9731 35 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973183-973819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9731 83-97381 9 bp Feature: domain Description: GIIM Note: maturase Location: 973873-974104 bp Feature: domain Description: GIIM Note: maturase Location: 973873-9741 04 bp Feature: domain Description: HNH Note: nucleases Location: 974356-974494 bp Feature: domain Description: HNH Note: nucleases Location: 974356-974494 bp Feature: gene Location: 974640-975824 bp Ori: AVK01453.1 Feature: domain Description: int Location: 974646-975660 bp Feature: domain Description: int Location: 974646-975660 bp Feature: gene Location: 975829-976065 bp Ori: AVK02135.1 Feature: domain Description: HTH_XRE Location: 975847-975964 bp Feature: domain Description: HTH_XRE Location: 975847-975964 bp Feature: gene Location: 2002440-2002676 bp Ori: AVJ97806.1 Gene: rpmB Feature: domain Description: RpmB Location: 2002443-2002665 bp Feature: domain Description: RpmB Location: 2002443-2002665 bp Feature: gene Location: 2002688-2002843 bp Ori: AVK00189.1 Gene: rpmG Feature: domain Description: rpmG Location: 2002691-2002835 bp Feature: domain Description: rpmG Location: 2002691 -2002835 bp Feature: gene Location: 2003905-2005611 bp Ori: AVK01832.1 Feature: domain Description: RVT_N Location: 2003962-2004202 bp Feature: domain Description: RVT_N Location: 2003962-2004202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004250-2004886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004250-2004886 bp Feature: domain Description: YkfC Location: 2005108-2005252 bp Feature: domain Description: YkfC Location: 20051 08-2005252 bp Feature: domain Description: HNHc Note: nucleases Location: 2005381-2005555 bp Feature: domain Description: HNHc Note: nucleases Location: 2005381 -2005555 bp Feature: gene Location: 2005665-2005808 bp Feature: gene Location: 2005818-2006180 bp Ori: AVJ96900.1 Feature: domain Description: COG3450 Location: 2005821-2006166 bp Feature: domain Description: COG3450 Location: 2005821 -20061 66 bp Feature: gene Location: 3428715-3429293 bp Ori: AVJ97658.1 Feature: domain Description: conj_PilL Location: 3428877-3429186 bp Feature: domain Description: conj_PilL Location: 3428877-34291 86 bp Feature: gene Location: 3429527-3430786 bp Ori: AVK00862.1 Feature: domain Description: HepA Location: 3429539-3429680 bp Feature: domain Description: HepA Location: 3429539-3429680 bp Feature: domain Description: SF2_C_SNF Location: 3430226-3430622 bp Feature: domain Description: SF2_C_SNF Location: 3430226-3430622 bp Feature: gene Location: 3430854-3432572 bp Ori: AVK02038.1 Feature: domain Description: RVT_N Location: 3430911-3431148 bp Feature: domain Description: RVT_N Location: 343091 1 -3431 1 48 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431199-3431850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3431 1 99-3431 850 bp Feature: domain Description: GIIM Note: maturase Location: 3431904-3432135 bp Feature: domain Description: GIIM Note: maturase Location: 3431 904-34321 35 bp Feature: domain Description: HNHc Note: nucleases Location: 3432369-3432525 bp Feature: domain Description: HNHc Note: nucleases Location: 3432369-3432525 bp Feature: gene Location: 3433169-3434224 bp Ori: AVJ98592.1 Feature: domain Description: DEXHc_Snf Location: 3433388-3433649 bp Feature: domain Description: DEXHc_Snf Location: 3433388-3433649 bp Feature: gene Location: 3434362-3434673 bp Feature: gene Location: 3833902-3834270 bp Feature: gene Location: 3834295-3835554 bp Ori: AVJ99208.1 Feature: domain Description: DEXHc_Snf Location: 3834328-3834484 bp Feature: domain Description: DEXHc_Snf Location: 3834328-3834484 bp Feature: domain Description: SF2_C_SNF Location: 3835012-3835390 bp Feature: domain Description: SF2_C_SNF Location: 383501 2-3835390 bp Feature: gene Location: 3835622-3837340 bp Ori: AVJ97480.1 Feature: domain Description: RVT_N Location: 3835679-3835916 bp Feature: domain Description: RVT_N Location: 3835679-383591 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835967-3836618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835967-383661 8 bp Feature: domain Description: GIIM Note: maturase Location: 3836672-3836903 bp Feature: domain Description: GIIM Note: maturase Location: 3836672-3836903 bp Feature: domain Description: HNHc Note: nucleases Location: 3837137-3837293 bp Feature: domain Description: HNHc Note: nucleases Location: 38371 37-3837293 bp Feature: gene Location: 3837937-3838962 bp Ori: AVJ95620.1 Feature: domain Description: DEXHc_Snf Location: 3838129-3838375 bp Feature: domain Description: DEXHc_Snf Location: 38381 29-3838375 bp Feature: gene Location: 3839067-3840512 bp Ori: AVJ98464.1 Feature: domain Description: AdoMet_MTases Location: 3839190-3839556 bp Feature: domain Description: AdoMet_MTases Location: 38391 90-3839556 bp Feature: gene Location: 5998023-5998328 bp Feature: gene Location: 5998464-5999519 bp Ori: AVJ95698.1 Feature: domain Description: DEXHc_Snf Location: 5998683-5998941 bp Feature: domain Description: DEXHc_Snf Location: 5998683-5998941 bp Feature: gene Location: 6000116-6001834 bp Ori: AVJ99129.1 Feature: domain Description: RVT_N Location: 6000173-6000410 bp Feature: domain Description: RVT_N Location: 60001 73-600041 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6000461-6001112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6000461 -6001 1 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 6001166-6001397 bp Feature: domain Description: GIIM Note: maturase Location: 6001 1 66-6001 397 bp Feature: domain Description: HNHc Note: nucleases Location: 6001631-6001787 bp Feature: domain Description: HNHc Note: nucleases Location: 6001 631 -6001 787 bp Feature: gene Location: 6001902-6003161 bp Ori: AVK00288.1 Feature: domain Description: KOG0389 Location: 6001932-6002052 bp Feature: domain Description: KOG0389 Location: 6001 932-6002052 bp Feature: domain Description: SF2_C_SNF Location: 6002601-6002997 bp Feature: domain Description: SF2_C_SNF Location: 6002601 -6002997 bp Feature: gene Location: 6003275-6004144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530), RpmB (COG0227), rpmG (PRK00595), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily )
conj_PilL (TIGR03748), HepA (COG0553), SF2_C_SNF (cd18793), DEXHc_Snf (cd17919), AdoMet_MTases (cl17173), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase )