myRT

myRT report for GCA_002983645.1_ASM298364v1

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Seq: CP027392.1 Escherichia coli O104:H4 strain FDAARGOS_349 plasmid unnamed2, complete sequence (75562 bp)
Overview 1 RT 1: 10552-14175 bp Neighborhood of RT #1 [10552, 14175] YkfC RVT-GII GIIM PHA02517 Feature: gene Location: 10552-10707 bp Ori: AVL28820.1 Feature: domain Description: YkfC Location: 10561-10702 bp Feature: domain Description: YkfC Location: 1 0561 -1 0702 bp Feature: gene Location: 10874-11983 bp Feature: gene Location: 12040-13422 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12172-12904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 72-1 2904 bp Feature: domain Description: GIIM Note: maturase Location: 12979-13177 bp Feature: domain Description: GIIM Note: maturase Location: 1 2979-1 31 77 bp Feature: gene Location: 13512-13985 bp Feature: domain Description: PHA02517 Location: 13518-13983 bp Feature: domain Description: PHA0251 7 Location: 1 351 8-1 3983 bp Feature: gene Location: 13951-14175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP027394.1 Escherichia coli O104:H4 strain FDAARGOS_349 chromosome, complete genome (5277316 bp)
Overview 1 RT 1: 2110368-2114524 bp 2 RT 2: 2128308-2131836 bp 3 RT 3: 3533084-3537563 bp 4 RT 4: 3556983-3560482 bp Neighborhood of RT #1 [2110368, 2114535] PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 Neighborhood of RT #2 [2128308, 2131835] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [3533084, 3537563] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3556983, 3560882] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 2110368-2110793 bp Feature: domain Description: PHA02517 Location: 2110458-2110794 bp Feature: domain Description: PHA02 517 Location: 2 110458-2 110794 bp Feature: gene Location: 2110726-2111157 bp Feature: gene Location: 2111451-2112974 bp Ori: AVL30880.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2111724-2112456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 11172 4-2 112 456 bp Feature: domain Description: GIIM Note: maturase Location: 2112531-2112729 bp Feature: domain Description: GIIM Note: maturase Location: 2 112 531-2 112 72 9 bp Feature: gene Location: 2113064-2113537 bp Feature: domain Description: PHA02517 Location: 2113070-2113535 bp Feature: domain Description: PHA02 517 Location: 2 113070-2 113535 bp Feature: gene Location: 2113840-2114535 bp Ori: AVL33899.1 Feature: domain Description: Peptidase_S6 Location: 2113855-2114524 bp Feature: domain Description: Peptidase_S6 Location: 2 113855-2 11452 4 bp Feature: gene Location: 2128308-2128388 bp Feature: gene Location: 2128354-2128827 bp Feature: domain Description: PHA02517 Location: 2128360-2128825 bp Feature: domain Description: PHA02 517 Location: 2 12 8360-2 12 882 5 bp Feature: gene Location: 2128917-2130440 bp Ori: AVL30889.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2129190-2129922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 9190-2 12 992 2 bp Feature: domain Description: GIIM Note: maturase Location: 2129997-2130195 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 9997-2 130195 bp Feature: gene Location: 2130734-2131105 bp Feature: gene Location: 2131098-2131835 bp Feature: domain Description: PHA02517 Location: 2131482-2131836 bp Feature: domain Description: PHA02 517 Location: 2 131482 -2 131836 bp Feature: gene Location: 3533084-3533823 bp Feature: domain Description: InsE Location: 3533087-3533423 bp Feature: domain Description: InsE Location: 3533087-353342 3 bp Feature: gene Location: 3533816-3534187 bp Feature: gene Location: 3534481-3536004 bp Ori: AVL32199.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3534754-3535486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3534754-3535486 bp Feature: domain Description: GIIM Note: maturase Location: 3535561-3535759 bp Feature: domain Description: GIIM Note: maturase Location: 3535561-3535759 bp Feature: gene Location: 3536094-3536567 bp Feature: domain Description: PHA02517 Location: 3536100-3536565 bp Feature: domain Description: PHA02 517 Location: 3536100-3536565 bp Feature: gene Location: 3536732-3537563 bp Feature: gene Location: 3556983-3557196 bp Feature: gene Location: 3557399-3557872 bp Feature: domain Description: PHA02517 Location: 3557405-3557870 bp Feature: domain Description: PHA02 517 Location: 3557405-3557870 bp Feature: gene Location: 3557962-3559485 bp Ori: AVL32210.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3558235-3558967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35582 35-3558967 bp Feature: domain Description: GIIM Note: maturase Location: 3559042-3559240 bp Feature: domain Description: GIIM Note: maturase Location: 3559042 -35592 40 bp Feature: gene Location: 3559779-3560150 bp Feature: gene Location: 3560143-3560882 bp Feature: domain Description: InsE Location: 3560146-3560482 bp Feature: domain Description: InsE Location: 3560146-3560482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), InsE (COG2963)