myRT

myRT report for GCA_002983865.1_ASM298386v1

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Seq: CP027407.1 Roseobacter denitrificans strain FDAARGOS_309 chromosome, complete genome (4133061 bp)
Overview 1 RT 1: 159326-166981 bp 2 RT 2: 395994-403034 bp 3 RT 3: 3262651-3265888 bp Neighborhood of RT #1 [159326, 167022] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like HsdR EcoEI_R_C RVT-UG2 COG3380 LolD Neighborhood of RT #2 [395994, 403034] HTH_Tnp_1 RVT-UG8 RVT-UG3 COG2931 Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha Neighborhood of RT #3 [3262651, 3265888] HTH_Tnp_1 RVT-UG17 HTH_Tnp_1 Feature: gene Location: 159326-160465 bp Ori: AVL51389.1 Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 159647-159827 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 1 59647-1 59827 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 159872-160436 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 1 59872-1 60436 bp Feature: gene Location: 160481-162829 bp Ori: AVL51390.1 Feature: domain Description: HsdR Location: 160502-162134 bp Feature: domain Description: HsdR Location: 1 60502-1 621 34 bp Feature: domain Description: EcoEI_R_C Location: 162353-162821 bp Feature: domain Description: EcoEI_R_C Location: 1 62353-1 62821 bp Feature: gene Location: 163367-164737 bp Ori: AVL51391.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 163643-164423 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 63643-1 64423 bp Feature: gene Location: 165179-166147 bp Ori: AVL54675.1 Feature: domain Description: COG3380 Location: 165197-166139 bp Feature: domain Description: COG3380 Location: 1 651 97-1 661 39 bp Feature: gene Location: 166330-167022 bp Ori: AVL51392.1 Feature: domain Description: LolD Location: 166339-166981 bp Feature: domain Description: LolD Location: 1 66339-1 66981 bp Feature: gene Location: 395994-396255 bp Ori: AVL54712.1 Feature: domain Description: HTH_Tnp_1 Location: 396000-396207 bp Feature: domain Description: HTH_Tnp_1 Location: 396000-396207 bp Feature: gene Location: 395171-395994 bp Feature: gene Location: 396988-398925 bp Ori: AVL51572.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 397498-397945 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 397498-397945 bp Feature: gene Location: 398918-400021 bp Ori: AVL51573.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 399026-399509 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 399026-399509 bp Feature: gene Location: 400743-402779 bp Ori: AVL51574.1 Feature: domain Description: COG2931 Location: 400749-401247 bp Feature: domain Description: COG2931 Location: 400749-401 247 bp Feature: domain Description: Int_alpha Location: 401409-401541 bp Feature: domain Description: Int_alpha Location: 401 409-401 541 bp Feature: domain Description: Int_alpha Location: 401649-401784 bp Feature: domain Description: Int_alpha Location: 401 649-401 784 bp Feature: domain Description: Int_alpha Location: 401862-401970 bp Feature: domain Description: Int_alpha Location: 401 862-401 970 bp Feature: domain Description: Int_alpha Location: 402087-402165 bp Feature: domain Description: Int_alpha Location: 402087-4021 65 bp Feature: domain Description: Int_alpha Location: 402312-402447 bp Feature: domain Description: Int_alpha Location: 40231 2-402447 bp Feature: domain Description: Int_alpha Location: 402558-402681 bp Feature: domain Description: Int_alpha Location: 402558-402681 bp Feature: gene Location: 402837-403034 bp Feature: gene Location: 3262651-3262906 bp Ori: AVL53903.1 Feature: domain Description: HTH_Tnp_1 Location: 3262657-3262864 bp Feature: domain Description: HTH_Tnp_1 Location: 3262657-3262864 bp Feature: gene Location: 3262906-3263765 bp Feature: gene Location: 3263912-3264838 bp Ori: AVL53904.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3263993-3264317 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3263993-326431 7 bp Feature: gene Location: 3264804-3265065 bp Ori: AVL54988.1 Feature: domain Description: HTH_Tnp_1 Location: 3264810-3265017 bp Feature: domain Description: HTH_Tnp_1 Location: 326481 0-326501 7 bp Feature: gene Location: 3265065-3265888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdR (COG4096), EcoEI_R_C (pfam08463), RVT-UG2, COG3380 (Predicted NAD/FAD-dependent oxidoreductase ), LolD (COG1136), HTH_Tnp_1 (pfam01527), RVT-UG8, RVT-UG3, COG2931 (Ca2+-binding protein, RTX toxin-related )
Int_alpha (smart00191), RVT-UG17