myRT

myRT report for GCA_002984485.1_ASM298448v1

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Seq: CP027417.1 Oligella urethralis strain FDAARGOS_329 chromosome, complete genome (2511315 bp)
Overview 1 RT 1: 268120-271524 bp 2 RT 2: 403760-407699 bp 3 RT 3: 418641-426364 bp 4 RT 4: 664098-668063 bp 5 RT 5: 1443563-1447254 bp 6 RT 6: 1521017-1524888 bp 7 RT 7: 2098715-2104305 bp 8 RT 8: 2136397-2140251 bp 9 RT 9: 2144756-2148585 bp 10 RT 10: 2424387-2429202 bp Neighborhood of RT #1 [268120, 271532] RVT-GII rve_3 COG1669 Neighborhood of RT #2 [403760, 407731] RVT-GII GIIM ViuB FhuD Neighborhood of RT #3 [418641, 426369] ligand_gated_channel IS285 RVT-GII GIIM TonB-copper COG4567 Neighborhood of RT #4 [664098, 668245] RVT-GII GIIM PRK14092 pcnB Neighborhood of RT #5 [1443563, 1447254] HTH_Tnp_1 KOG3824 RVT-GII GIIM Neighborhood of RT #6 [1521017, 1524888] OmpA_C-like RVT-GII GIIM Neighborhood of RT #7 [2098715, 2104305] 2met_isocit_dHY PRK15401 RVT-GII GIIM Neighborhood of RT #8 [2136397, 2140251] PRK13394 PRK10538 RVT-GII GIIM Neighborhood of RT #9 [2144756, 2148585] PRK00052 TlpA_like_family EGL9 RVT-GII Neighborhood of RT #10 [2424387, 2429231] RVT-GII PRK08190 AckA Feature: gene Location: 268120-268302 bp Feature: gene Location: 268381-268593 bp Feature: gene Location: 268876-270152 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269092-269710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269092-26971 0 bp Feature: gene Location: 270840-271007 bp Ori: AVL70195.1 Feature: domain Description: rve_3 Location: 270855-270963 bp Feature: domain Description: rve_3 Location: 270855-270963 bp Feature: gene Location: 271239-271532 bp Ori: AVL70196.1 Feature: domain Description: COG1669 Location: 271242-271524 bp Feature: domain Description: COG1 669 Location: 271 242-271 524 bp Feature: gene Location: 403760-403972 bp Feature: gene Location: 404255-405532 bp Ori: AVL70308.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404471-405089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404471 -405089 bp Feature: domain Description: GIIM Note: maturase Location: 405143-405362 bp Feature: domain Description: GIIM Note: maturase Location: 4051 43-405362 bp Feature: gene Location: 405852-406835 bp Ori: AVL70309.1 Feature: domain Description: ViuB Location: 406296-406827 bp Feature: domain Description: ViuB Location: 406296-406827 bp Feature: gene Location: 406832-407731 bp Ori: AVL70310.1 Feature: domain Description: FhuD Location: 406937-407699 bp Feature: domain Description: FhuD Location: 406937-407699 bp Feature: gene Location: 418641-420851 bp Ori: AVL70319.1 Feature: domain Description: ligand_gated_channel Location: 418818-420849 bp Feature: domain Description: ligand_gated_channel Location: 41 881 8-420849 bp Feature: gene Location: 421098-422315 bp Ori: AVL72082.1 Feature: domain Description: IS285 Location: 421167-422301 bp Feature: domain Description: IS285 Location: 421 1 67-422301 bp Feature: gene Location: 422424-423275 bp Ori: AVL70320.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422427-422832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422427-422832 bp Feature: domain Description: GIIM Note: maturase Location: 422886-423105 bp Feature: domain Description: GIIM Note: maturase Location: 422886-4231 05 bp Feature: gene Location: 423749-425743 bp Ori: AVL70321.1 Feature: domain Description: TonB-copper Location: 423896-425732 bp Feature: domain Description: TonB-copper Location: 423896-425732 bp Feature: gene Location: 425836-426369 bp Ori: AVL70322.1 Feature: domain Description: COG4567 Location: 425854-426364 bp Feature: domain Description: COG4567 Location: 425854-426364 bp Feature: gene Location: 664098-664310 bp Feature: gene Location: 664390-664602 bp Feature: gene Location: 664885-666162 bp Ori: AVL70512.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665101-665719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6651 01 -66571 9 bp Feature: domain Description: GIIM Note: maturase Location: 665773-665992 bp Feature: domain Description: GIIM Note: maturase Location: 665773-665992 bp Feature: gene Location: 666250-666744 bp Ori: AVL70513.1 Gene: folK Feature: domain Description: PRK14092 Location: 666265-666715 bp Feature: domain Description: PRK1 4092 Location: 666265-66671 5 bp Feature: gene Location: 666737-668245 bp Ori: AVL70514.1 Feature: domain Description: pcnB Location: 666875-668063 bp Feature: domain Description: pcnB Location: 666875-668063 bp Feature: gene Location: 1443563-1443742 bp Ori: AVL71163.1 Feature: domain Description: HTH_Tnp_1 Location: 1443569-1443707 bp Feature: domain Description: HTH_Tnp_1 Location: 1 443569-1 443707 bp Feature: gene Location: 1443931-1444665 bp Ori: AVL71164.1 Feature: domain Description: KOG3824 Location: 1444003-1444612 bp Feature: domain Description: KOG3824 Location: 1 444003-1 44461 2 bp Feature: gene Location: 1445224-1446501 bp Ori: AVL71165.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1445440-1446058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 445440-1 446058 bp Feature: domain Description: GIIM Note: maturase Location: 1446112-1446331 bp Feature: domain Description: GIIM Note: maturase Location: 1 4461 1 2-1 446331 bp Feature: gene Location: 1446784-1446996 bp Feature: gene Location: 1447075-1447254 bp Feature: gene Location: 1521017-1521634 bp Ori: AVL71225.1 Feature: domain Description: OmpA_C-like Location: 1521320-1521617 bp Feature: domain Description: OmpA_C-like Location: 1 521 320-1 521 61 7 bp Feature: gene Location: 1522110-1522778 bp Feature: gene Location: 1522855-1524132 bp Ori: AVL71226.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523071-1523689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 523071 -1 523689 bp Feature: domain Description: GIIM Note: maturase Location: 1523743-1523962 bp Feature: domain Description: GIIM Note: maturase Location: 1 523743-1 523962 bp Feature: gene Location: 1524415-1524627 bp Feature: gene Location: 1524706-1524888 bp Feature: gene Location: 2098715-2101324 bp Ori: AVL71727.1 Feature: domain Description: 2met_isocit_dHY Location: 2098727-2101310 bp Feature: domain Description: 2met_isocit_dHY Location: 2098727-21 01 31 0 bp Feature: gene Location: 2101434-2102087 bp Ori: AVL72185.1 Feature: domain Description: PRK15401 Location: 2101455-2102082 bp Feature: domain Description: PRK1 5401 Location: 21 01 455-21 02082 bp Feature: gene Location: 2102266-2103543 bp Ori: AVL71728.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2102482-2103100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 02482-21 031 00 bp Feature: domain Description: GIIM Note: maturase Location: 2103154-2103373 bp Feature: domain Description: GIIM Note: maturase Location: 21 031 54-21 03373 bp Feature: gene Location: 2103826-2104038 bp Feature: gene Location: 2104117-2104305 bp Feature: gene Location: 2136397-2137194 bp Ori: AVL71758.1 Feature: domain Description: PRK13394 Location: 2136418-2137192 bp Feature: domain Description: PRK1 3394 Location: 21 3641 8-21 371 92 bp Feature: gene Location: 2137355-2138110 bp Ori: AVL71759.1 Feature: domain Description: PRK10538 Location: 2137367-2138105 bp Feature: domain Description: PRK1 0538 Location: 21 37367-21 381 05 bp Feature: gene Location: 2138194-2139471 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2138410-2139028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3841 0-21 39028 bp Feature: domain Description: GIIM Note: maturase Location: 2139082-2139301 bp Feature: domain Description: GIIM Note: maturase Location: 21 39082-21 39301 bp Feature: gene Location: 2139754-2139966 bp Feature: gene Location: 2140045-2140251 bp Feature: gene Location: 2144756-2145541 bp Ori: AVL71766.1 Feature: domain Description: PRK00052 Location: 2144801-2145083 bp Feature: domain Description: PRK00052 Location: 21 44801 -21 45083 bp Feature: domain Description: TlpA_like_family Location: 2145155-2145491 bp Feature: domain Description: TlpA_like_family Location: 21 451 55-21 45491 bp Feature: gene Location: 2145640-2146266 bp Ori: AVL71767.1 Feature: domain Description: EGL9 Location: 2145682-2146249 bp Feature: domain Description: EGL9 Location: 21 45682-21 46249 bp Feature: gene Location: 2146547-2147823 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2146763-2147381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 46763-21 47381 bp Feature: gene Location: 2148106-2148318 bp Feature: gene Location: 2148397-2148585 bp Feature: gene Location: 2424387-2424584 bp Feature: gene Location: 2424663-2424875 bp Feature: gene Location: 2425158-2426434 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425374-2425992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2425374-2425992 bp Feature: gene Location: 2426609-2427991 bp Ori: AVL71998.1 Feature: domain Description: PRK08190 Location: 2426618-2427983 bp Feature: domain Description: PRK081 90 Location: 242661 8-2427983 bp Feature: gene Location: 2428014-2429231 bp Ori: AVL71999.1 Feature: domain Description: AckA Location: 2428047-2429202 bp Feature: domain Description: AckA Location: 2428047-2429202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rve_3 (pfam13683), COG1669 (Predicted nucleotidyltransferase ), GIIM (pfam08388), ViuB (COG2375), FhuD (cd01146), ligand_gated_channel (cd01347), IS285 (COG3328), TonB-copper (TIGR01778), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains )
PRK14092 (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase), pcnB (TIGR01942), HTH_Tnp_1 (pfam01527), KOG3824 (KOG3824, Huntingtin interacting protein HYPE ), OmpA_C-like (cl30079), 2met_isocit_dHY (TIGR02333), PRK15401 (DNA oxidative demethylase AlkB), PRK13394 (3-hydroxybutyrate dehydrogenase; Provisional), PRK10538 (bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG), PRK00052 (prolipoprotein diacylglyceryl transferase; Reviewed)
TlpA_like_family (cd02966), EGL9 (COG3751), PRK08190 (bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated), AckA (COG0282)