myRT

myRT report for GCA_002996945.1_ASM299694v1

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Seq: CP027535.1 Escherichia coli strain AR_0081 plasmid unnamed1, complete sequence (101207 bp)
Overview 1 RT 1: 75818-79996 bp Neighborhood of RT #1 [75818, 79996] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 75818-76051 bp Ori: AVN41696.1 Feature: domain Description: DUF905 Location: 75848-76046 bp Feature: domain Description: DUF905 Location: 75848-76046 bp Feature: gene Location: 76109-76594 bp Ori: AVN41697.1 Feature: domain Description: PRK13732 Location: 76112-76592 bp Feature: domain Description: PRK1 3732 Location: 761 1 2-76592 bp Feature: gene Location: 76744-78645 bp Ori: AVN41698.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77011-77842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7701 1 -77842 bp Feature: domain Description: Intron_maturas2 Location: 77956-78214 bp Feature: domain Description: Intron_maturas2 Location: 77956-7821 4 bp Feature: domain Description: HNHc Note: nucleases Location: 78388-78550 bp Feature: domain Description: HNHc Note: nucleases Location: 78388-78550 bp Feature: gene Location: 79307-79692 bp Feature: gene Location: 79649-79996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CP027534.1 Escherichia coli strain AR_0081 chromosome, complete genome (5022408 bp)
Overview 1 RT 1: 3689352-3694250 bp Neighborhood of RT #1 [3689352, 3694250] RVT-Retrons Feature: gene Location: 3689352-3689867 bp Feature: gene Location: 3689864-3690991 bp Feature: gene Location: 3691238-3692995 bp Ori: AVN40110.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3691382-3692000 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3691382 -3692 000 bp Feature: gene Location: 3693566-3693805 bp Feature: gene Location: 3694020-3694250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CP027537.1 Escherichia coli strain AR_0081 plasmid unnamed2, complete sequence (100279 bp)
Overview 1 RT 1: 44532-47848 bp Neighborhood of RT #1 [44532, 47886] Rve RVT-GII GIIM PHA02517 InsE Feature: gene Location: 44532-45236 bp Ori: AVN41876.1 Feature: domain Description: Rve Location: 44535-45180 bp Feature: domain Description: Rve Location: 4453 5-45180 bp Feature: gene Location: 45291-45503 bp Feature: gene Location: 45457-46980 bp Ori: AVN41877.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45730-46462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4573 0-46462 bp Feature: domain Description: GIIM Note: maturase Location: 46537-46735 bp Feature: domain Description: GIIM Note: maturase Location: 4653 7-4673 5 bp Feature: gene Location: 47070-47453 bp Feature: domain Description: PHA02517 Location: 47076-47409 bp Feature: domain Description: PHA02517 Location: 47076-47409 bp Feature: gene Location: 47482-47886 bp Ori: AVN41878.1 Feature: domain Description: InsE Location: 47512-47848 bp Feature: domain Description: InsE Location: 47512-47848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)