myRT

myRT report for GCA_002999035.1_ASM299903v1

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Seq: CP027241.1 Lachnospiraceae bacterium oral taxon 500 strain W11650 chromosome, complete genome (3201383 bp)
Overview 1 RT 1: 638302-643579 bp 2 RT 2: 1668401-1674881 bp 3 RT 3: 1750459-1756105 bp Neighborhood of RT #1 [638302, 643579] HATPase_c_3 RVT-GII GIIM Neighborhood of RT #2 [1668401, 1674955] PrgI VirB4_CagE VirB4_CagE AAA_10 RVT_N RVT-GII GIIM TraC-F-type INT_RitA_C_like Neighborhood of RT #3 [1750459, 1756233] Maff2 RVT-GII HNHc Maff2 VirD4 Feature: gene Location: 638302-640275 bp Ori: AVM68312.1 Feature: domain Description: HATPase_c_3 Location: 638371-638704 bp Feature: domain Description: HATPase_c_3 Location: 638371 -638704 bp Feature: gene Location: 640272-640469 bp Feature: gene Location: 640985-642394 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641501-641957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641 501 -641 957 bp Feature: domain Description: GIIM Note: maturase Location: 642005-642218 bp Feature: domain Description: GIIM Note: maturase Location: 642005-64221 8 bp Feature: gene Location: 642556-642660 bp Feature: gene Location: 643343-643579 bp Feature: gene Location: 1668401-1668811 bp Ori: AVM69138.1 Feature: domain Description: PrgI Location: 1668416-1668686 bp Feature: domain Description: PrgI Location: 1 66841 6-1 668686 bp Feature: gene Location: 1668771-1670351 bp Ori: AVM69139.1 Feature: domain Description: VirB4_CagE Location: 1668954-1669404 bp Feature: domain Description: VirB4_CagE Location: 1 668954-1 669404 bp Feature: domain Description: VirB4_CagE Location: 1669584-1670118 bp Feature: domain Description: VirB4_CagE Location: 1 669584-1 6701 1 8 bp Feature: domain Description: AAA_10 Location: 1670193-1670334 bp Feature: domain Description: AAA_1 0 Location: 1 6701 93-1 670334 bp Feature: gene Location: 1670887-1672563 bp Ori: AVM69140.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1670959-1671199 bp Feature: domain Description: RVT_N Location: 1 670959-1 671 1 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1671247-1671907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 671 247-1 671 907 bp Feature: domain Description: GIIM Note: maturase Location: 1671964-1672195 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 964-1 6721 95 bp Feature: gene Location: 1672508-1673587 bp Ori: AVM69141.1 Feature: domain Description: TraC-F-type Location: 1672649-1673378 bp Feature: domain Description: TraC-F-type Location: 1 672649-1 673378 bp Feature: gene Location: 1673714-1674955 bp Ori: AVM69142.1 Feature: domain Description: INT_RitA_C_like Location: 1674350-1674881 bp Feature: domain Description: INT_RitA_C_like Location: 1 674350-1 674881 bp Feature: gene Location: 1750459-1751328 bp Feature: gene Location: 1751340-1751438 bp Feature: domain Description: Maff2 Location: 1751343-1751433 bp Feature: domain Description: Maff2 Location: 1 751 343-1 751 433 bp Feature: gene Location: 1751591-1753450 bp Ori: AVM69198.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1751909-1752647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 751 909-1 752647 bp Feature: domain Description: HNHc Note: nucleases Location: 1753178-1753340 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7531 78-1 753340 bp Feature: gene Location: 1754173-1754304 bp Ori: AVM70481.1 Feature: domain Description: Maff2 Location: 1754176-1754302 bp Feature: domain Description: Maff2 Location: 1 7541 76-1 754302 bp Feature: gene Location: 1754458-1756233 bp Ori: AVM69199.1 Feature: domain Description: VirD4 Location: 1754671-1756105 bp Feature: domain Description: VirD4 Location: 1 754671 -1 7561 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-GII, GIIM (pfam08388), PrgI (pfam12666), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT_N (pfam13655), TraC-F-type (TIGR02746), INT_RitA_C_like (cd01188), Maff2 (pfam12750)
HNHc (smart00507), VirD4 (COG3505)