myRT

myRT report for GCA_003003865.1_ASM300386v1

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Seq: CP021257.1 Legionella pneumophila subsp. fraseri strain Lansing 3 chromosome, complete genome (3611000 bp)
Overview 1 RT 1: 680493-688101 bp 2 RT 2: 711797-715748 bp 3 RT 3: 1129379-1134312 bp 4 RT 4: 2590954-2595255 bp Neighborhood of RT #1 [680493, 688101] RVT-GII GIIM Neighborhood of RT #2 [711797, 715748] COG5421 RVT-UG18 Neighborhood of RT #3 [1129379, 1134326] Tra_M RVT_N RVT-GII GIIM Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 NTP-PPase_MazG_Cterm Neighborhood of RT #4 [2590954, 2595347] COG3547 PHA02517 RVT-GII RVT_1 GIIM InsE HTH_23 HTH_33 Feature: gene Location: 680493-681908 bp Feature: gene Location: 682151-683500 bp Feature: gene Location: 684238-685476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684436-685093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684436-685093 bp Feature: domain Description: GIIM Note: maturase Location: 685174-685384 bp Feature: domain Description: GIIM Note: maturase Location: 6851 74-685384 bp Feature: gene Location: 685724-686635 bp Feature: gene Location: 686743-688101 bp Feature: gene Location: 711797-712891 bp Feature: domain Description: COG5421 Location: 711980-712772 bp Feature: domain Description: COG5421 Location: 71 1 980-71 2772 bp Feature: gene Location: 712888-713085 bp Feature: gene Location: 713221-713964 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 713224-713761 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 71 3224-71 3761 bp Feature: gene Location: 714131-715180 bp Feature: gene Location: 715593-715748 bp Feature: gene Location: 1129379-1129753 bp Feature: domain Description: Tra_M Location: 1129427-1129622 bp Feature: domain Description: Tra_M Location: 1 1 29427-1 1 29622 bp Feature: gene Location: 1130213-1130365 bp Feature: gene Location: 1130601-1132121 bp Feature: domain Description: RVT_N Location: 1130658-1130901 bp Feature: domain Description: RVT_N Location: 1 1 30658-1 1 30901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1130946-1131570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 30946-1 1 31 570 bp Feature: domain Description: GIIM Note: maturase Location: 1131621-1131855 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 31 621 -1 1 31 855 bp Feature: gene Location: 1132192-1133643 bp Feature: domain Description: Tnp_DNA_bind Location: 1132231-1132399 bp Feature: domain Description: Tnp_DNA_bind Location: 1 1 32231 -1 1 32399 bp Feature: domain Description: DDE_Tnp_1 Location: 1133056-1133350 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 33056-1 1 33350 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1133356-1133635 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1 1 33356-1 1 33635 bp Feature: gene Location: 1133949-1134326 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 1133976-1134312 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 1 1 33976-1 1 3431 2 bp Feature: gene Location: 2590954-2591991 bp Feature: domain Description: COG3547 Location: 2590972-2591938 bp Feature: domain Description: COG3547 Location: 2590972-2591 938 bp Feature: gene Location: 2592350-2592607 bp Feature: domain Description: PHA02517 Location: 2592353-2592569 bp Feature: domain Description: PHA0251 7 Location: 2592353-2592569 bp Feature: gene Location: 2592713-2593867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2592917-2593115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259291 7-25931 1 5 bp Feature: domain Description: RVT_1 Location: 2593169-2593487 bp Feature: domain Description: RVT_1 Location: 25931 69-2593487 bp Feature: domain Description: GIIM Note: maturase Location: 2593565-2593784 bp Feature: domain Description: GIIM Note: maturase Location: 2593565-2593784 bp Feature: gene Location: 2594404-2594697 bp Feature: domain Description: InsE Location: 2594413-2594677 bp Feature: domain Description: InsE Location: 259441 3-2594677 bp Feature: gene Location: 2594787-2595347 bp Feature: domain Description: HTH_23 Location: 2594874-2594997 bp Feature: domain Description: HTH_23 Location: 2594874-2594997 bp Feature: domain Description: HTH_33 Location: 2595090-2595255 bp Feature: domain Description: HTH_33 Location: 2595090-2595255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5421 (Transposase ), RVT-UG18, Tra_M (pfam05261), RVT_N (pfam13655), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), NTP-PPase_MazG_Cterm (cd11529)
COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT_1 (pfam00078), InsE (COG2963), HTH_23 (pfam13384), HTH_33 (pfam13592)