myRT

myRT report for GCA_003003955.1_ASM300395v1

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Seq: CP021258.1 Legionella pneumophila subsp. fraseri strain D-5744 chromosome, complete genome (3487066 bp)
Overview 1 RT 1: 810718-815257 bp 2 RT 2: 2152629-2156643 bp 3 RT 3: 2299704-2304520 bp Neighborhood of RT #1 [810718, 815295] HTH_23 HTH_33 InsE RVT-GII RVT_1 GIIM Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 PHA02517 Neighborhood of RT #2 [2152629, 2156643] RVT-UG18 Neighborhood of RT #3 [2299704, 2304651] NTP-PPase_MazG_Cterm Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 810718-811278 bp Feature: domain Description: HTH_23 Location: 810805-810928 bp Feature: domain Description: HTH_23 Location: 81 0805-81 0928 bp Feature: domain Description: HTH_33 Location: 811021-811186 bp Feature: domain Description: HTH_33 Location: 81 1 021 -81 1 1 86 bp Feature: gene Location: 811368-811661 bp Feature: domain Description: InsE Location: 811377-811641 bp Feature: domain Description: InsE Location: 81 1 377-81 1 641 bp Feature: gene Location: 812198-813352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812402-812600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 2402-81 2600 bp Feature: domain Description: RVT_1 Location: 812654-812972 bp Feature: domain Description: RVT_1 Location: 81 2654-81 2972 bp Feature: domain Description: GIIM Note: maturase Location: 813050-813269 bp Feature: domain Description: GIIM Note: maturase Location: 81 3050-81 3269 bp Feature: gene Location: 813412-814863 bp Feature: domain Description: Tnp_DNA_bind Location: 813451-813619 bp Feature: domain Description: Tnp_DNA_bind Location: 81 3451 -81 361 9 bp Feature: domain Description: DDE_Tnp_1 Location: 814276-814570 bp Feature: domain Description: DDE_Tnp_1 Location: 81 4276-81 4570 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 814576-814855 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 81 4576-81 4855 bp Feature: gene Location: 814951-815295 bp Feature: domain Description: PHA02517 Location: 815014-815257 bp Feature: domain Description: PHA0251 7 Location: 81 501 4-81 5257 bp Feature: gene Location: 2152629-2152790 bp Feature: gene Location: 2152958-2153971 bp Feature: gene Location: 2154469-2154834 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 2154472-2154832 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 21 54472-21 54832 bp Feature: gene Location: 2154856-2155158 bp Feature: gene Location: 2155312-2156643 bp Feature: gene Location: 2299704-2300081 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2299731-2300067 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 2299731 -2300067 bp Feature: gene Location: 2300387-2301838 bp Feature: domain Description: Tnp_DNA_bind Location: 2300426-2300594 bp Feature: domain Description: Tnp_DNA_bind Location: 2300426-2300594 bp Feature: domain Description: DDE_Tnp_1 Location: 2301251-2301545 bp Feature: domain Description: DDE_Tnp_1 Location: 2301 251 -2301 545 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2301551-2301830 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2301 551 -2301 830 bp Feature: gene Location: 2301909-2303429 bp Feature: domain Description: RVT_N Location: 2301966-2302209 bp Feature: domain Description: RVT_N Location: 2301 966-2302209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302254-2302878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302254-2302878 bp Feature: domain Description: GIIM Note: maturase Location: 2302929-2303163 bp Feature: domain Description: GIIM Note: maturase Location: 2302929-23031 63 bp Feature: gene Location: 2303665-2303817 bp Feature: gene Location: 2304277-2304651 bp Feature: domain Description: Tra_M Location: 2304325-2304520 bp Feature: domain Description: Tra_M Location: 2304325-2304520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), InsE (COG2963), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), PHA02517 (putative transposase OrfB; Reviewed)
RVT-UG18, NTP-PPase_MazG_Cterm (cd11529), RVT_N (pfam13655), Tra_M (pfam05261)