myRT

myRT report for GCA_003004215.1_ASM300421v1

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Seq: CP021277.1 Legionella pneumophila subsp. fraseri strain D-4058 chromosome, complete genome (3548205 bp)
Overview 1 RT 1: 800925-805739 bp 2 RT 2: 1023855-1027954 bp 3 RT 3: 2350365-2354930 bp Neighborhood of RT #1 [800925, 805753] HTH_23 HTH_33 InsE RVT-GII RVT_1 GIIM Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 NTP-PPase_MazG_Cterm Neighborhood of RT #2 [1023855, 1027954] RVT-UG18 Neighborhood of RT #3 [2350365, 2355061] PHA02517 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT_N RVT-GII GIIM Tra_M Feature: gene Location: 800925-801485 bp Feature: domain Description: HTH_23 Location: 801012-801135 bp Feature: domain Description: HTH_23 Location: 801 01 2-801 1 35 bp Feature: domain Description: HTH_33 Location: 801228-801393 bp Feature: domain Description: HTH_33 Location: 801 228-801 393 bp Feature: gene Location: 801575-801868 bp Feature: domain Description: InsE Location: 801584-801848 bp Feature: domain Description: InsE Location: 801 584-801 848 bp Feature: gene Location: 802405-803559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802609-802807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802609-802807 bp Feature: domain Description: RVT_1 Location: 802861-803179 bp Feature: domain Description: RVT_1 Location: 802861 -8031 79 bp Feature: domain Description: GIIM Note: maturase Location: 803257-803476 bp Feature: domain Description: GIIM Note: maturase Location: 803257-803476 bp Feature: gene Location: 803619-805070 bp Feature: domain Description: Tnp_DNA_bind Location: 803658-803826 bp Feature: domain Description: Tnp_DNA_bind Location: 803658-803826 bp Feature: domain Description: DDE_Tnp_1 Location: 804483-804777 bp Feature: domain Description: DDE_Tnp_1 Location: 804483-804777 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 804783-805062 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 804783-805062 bp Feature: gene Location: 805376-805753 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 805403-805739 bp Feature: domain Description: NTP-PPase_MazG_Cterm Location: 805403-805739 bp Feature: gene Location: 1023855-1025186 bp Feature: gene Location: 1025340-1025642 bp Feature: gene Location: 1025664-1026029 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1025667-1026027 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 1 025667-1 026027 bp Feature: gene Location: 1026527-1027540 bp Feature: gene Location: 1027811-1027954 bp Feature: gene Location: 2350365-2350709 bp Feature: domain Description: PHA02517 Location: 2350428-2350671 bp Feature: domain Description: PHA0251 7 Location: 2350428-2350671 bp Feature: gene Location: 2350797-2352248 bp Feature: domain Description: Tnp_DNA_bind Location: 2350836-2351004 bp Feature: domain Description: Tnp_DNA_bind Location: 2350836-2351 004 bp Feature: domain Description: DDE_Tnp_1 Location: 2351661-2351955 bp Feature: domain Description: DDE_Tnp_1 Location: 2351 661 -2351 955 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2351961-2352240 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2351 961 -2352240 bp Feature: gene Location: 2352319-2353839 bp Feature: domain Description: RVT_N Location: 2352376-2352619 bp Feature: domain Description: RVT_N Location: 2352376-235261 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352664-2353288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352664-2353288 bp Feature: domain Description: GIIM Note: maturase Location: 2353339-2353573 bp Feature: domain Description: GIIM Note: maturase Location: 2353339-2353573 bp Feature: gene Location: 2354075-2354227 bp Feature: gene Location: 2354687-2355061 bp Feature: domain Description: Tra_M Location: 2354735-2354930 bp Feature: domain Description: Tra_M Location: 2354735-2354930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), InsE (COG2963), RVT-GII, RVT_1 (pfam00078), GIIM (pfam08388), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), NTP-PPase_MazG_Cterm (cd11529)
RVT-UG18, PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), Tra_M (pfam05261)